Browse Element(s) Details


OsAffx.24850.1.S1_s_at

Description tigr:9630.m05277
TID=OsAffx.24850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5338011/11expressed protein
LOC_Os04g429001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein
LOC_Os02g53380OsAffx.24850.1.S1_s_at11/112+32665082..32667807expressed protein
LOC_Os02g53384Os.50960.1.S1_at11/112+32672899..32675300expressed protein
LOC_Os02g53384Os.50960.2.S1_x_at10/112+32672899..32675300expressed protein
LOC_Os02g53390OsAffx.24851.1.S1_x_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53390OsAffx.24851.1.S1_at11/112+32675760..32676080hypothetical protein
LOC_Os02g53400OsAffx.3056.1.S1_at10/112+32678281..32680037expressed protein
LOC_Os02g53410Os.16435.1.S1_at11/112+32680222..32680955expressed protein
LOC_Os02g53420Os.10873.1.S1_at10/112+32682738..32687169Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os02g53430Os.56994.1.S1_at10/112+32689595..32691716DNA-3-methyladenine glycosylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24850.1.S1_s_at--1062--6671Chr02:32665595..32665619 (25 bp)
GTTGCGACAAGGAAACCGAGCCAAT
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--1126--1531Chr02:32665530..32665554 (25 bp)
AGCATCCTGGAGGACGTGCTCAGTG
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--532--2171Chr02:32665497..32665521 (25 bp)
ACACCTGTTGTTTACCTGAATATCA
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--903--8191Chr02:32665454..32665478 (25 bp)
GGAAGGAGGCACACCCTTCTGTCTA
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--292--8711Chr02:32665435..32665459 (25 bp)
TGTCTACCGCAAGCAGAAGTTGACT
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--340--252Chr04:25162964..25162984 (21 bp)
ATATCAGGACTGCAGCCACTGGTGC
LOC_Os04g42900
OsAffx.24850.1.S1_s_at--82--6091Chr02:32665352..32665376 (25 bp)
GAGTACCCGACTCCTGGAATGAGCT
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--297--8211Chr02:32665337..32665361 (25 bp)
GGAATGAGCTTCTCTACGCACAGAT
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--425--9891Chr02:32665261..32665285 (25 bp)
TACTTGTTCCTGTACATGAGCTGTT
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--289--6551Chr02:32665215..32665239 (25 bp)
GATTTTGGTATCCTTTCATAGAGAG
LOC_Os02g53380
OsAffx.24850.1.S1_s_at--919--2171Chr02:32665148..32665172 (25 bp)
ACACGTATTCTGTATAGGCTCATAG
LOC_Os02g53380
Target Sequence 
GTTGCGACAAGGAAACCGAGCCAATAACAAATGAGAAGTTCCTCACACCATACCCACGGAAGATGAGCATCCTGGAGGAC
GTGCTCAGTGGGATGAAAACACCTGTTGTTTACCTGAATATCACAAGGATGACTGACTACAGGAAGGAGGCACACCCTTC
TGTCTACCGCAAGCAGAAGTTGACTGAGGAGGAGAAGAAATCGCCTCAGATATATCAGGACTGCAGCCACTGGTGCCTCC
CTGGAGTACCCGACTCCTGGAATGAGCTTCTCTACGCACAGATTATGGTTAAACAGCATCAAATGTTGCACCAATAAAGG
CAAGTGTGTTGAATTACTTGTTCCTGTACATGAGCTGTTGTTTGTATGAGTGAGGTTAAGGATTTTGGTATCCTTTCATA
GAGAGAAGTAGTCAGTTAGTCACAGTCTGACAGTCGATATACGACCAACACGTATTCTGTATAGGCTCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24850.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis