Browse Element(s) Details


OsAffx.24854.1.S1_at

Description tigr:9630.m05301
TID=OsAffx.24854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5360011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53540NANA2+32751206..32754497retrotransposon protein, putative, unclassified
LOC_Os02g53550NANA2+32755126..32761261retrotransposon protein, putative, unclassified
LOC_Os02g53559NANA2+32764474..32764597NA
LOC_Os02g53570OsAffx.3057.1.S1_at10/112+32770892..32771244hypothetical protein
LOC_Os02g53580Os.50164.1.S1_at11/112+32772316..32772895expressed protein
LOC_Os02g53590OsAffx.24853.1.S1_at11/112+32773930..32774555S locus-related glycoprotein 1 binding pollen coat protein containing protein, expressed
LOC_Os02g53600OsAffx.24854.1.S1_at11/112+32777375..32777745hypothetical protein
LOC_Os02g53610OsAffx.30226.2.S1_s_at10/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.30226.2.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.442.1.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.24587.1.S1_x_at3/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53620OsAffx.12626.1.S1_at7/112+32788582..32794998CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os02g53630Os.31312.2.S1_x_at4/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53630Os.31312.5.S1_x_at3/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_x_at3/112+32802497..32804327retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24854.1.S1_at--902--411Chr02:32777564..32777689 (25 bp)
ATCATCACCACCAGGTGGCGTGACG
LOC_Os02g53600
OsAffx.24854.1.S1_at--900--8931Chr02:32777544..32777568 (25 bp)
TGACGGCGCAGCTGGAAACCTGCAC
LOC_Os02g53600
OsAffx.24854.1.S1_at--50--3391Chr02:32777536..32777560 (25 bp)
CAGCTGGAAACCTGCACGGAGGTGA
LOC_Os02g53600
OsAffx.24854.1.S1_at--1121--9691Chr02:32777511..32777535 (25 bp)
TCAACCGGGAATACCCGACGTGCGA
LOC_Os02g53600
OsAffx.24854.1.S1_at--1123--3931Chr02:32777506..32777530 (25 bp)
CGGGAATACCCGACGTGCGACAGCG
LOC_Os02g53600
OsAffx.24854.1.S1_at--323--5651Chr02:32777488..32777512 (25 bp)
GACAGCGGCTTGTGCGTGGCGAACT
LOC_Os02g53600
OsAffx.24854.1.S1_at--778--8471Chr02:32777472..32777496 (25 bp)
TGGCGAACTGCCAGCGGCAGTACAG
LOC_Os02g53600
OsAffx.24854.1.S1_at--413--4931Chr02:32777442..32777466 (25 bp)
GCATTGGCCAGTGCGTCGGCAACAA
LOC_Os02g53600
OsAffx.24854.1.S1_at--159--9151Chr02:32777431..32777455 (25 bp)
TGCGTCGGCAACAAGTGCAAGTGCG
LOC_Os02g53600
OsAffx.24854.1.S1_at--780--9431Chr02:32777427..32777451 (25 bp)
TCGGCAACAAGTGCAAGTGCGACTA
LOC_Os02g53600
OsAffx.24854.1.S1_at--862--2211Chr02:32777421..32777445 (25 bp)
ACAAGTGCAAGTGCGACTACTCCTG
LOC_Os02g53600
Target Sequence 
ATCATCACCACCAGGTGGCGTGACGGCGCAGCTGGAAACCTGCACGGAGGTGATCAACCGGGAATACCCGACGTGCGACA
GCGGCTTGTGCGTGGCGAACTGCCAGCGGCAGTACAGGGGCGGCATTGGCCAGTGCGTCGGCAACAAGTGCAAGTGCGAC
TACTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis