Browse Element(s) Details


OsAffx.24866.2.S1_at

Description tigr:9630.m05403
TID=OsAffx.24866.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5448011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54400Os.14491.2.S1_x_at2/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54400Os.47463.1.S1_x_at1/112+33328089..33331789transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54410OsAffx.21289.1.S1_at1/112+33334661..33339617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g54420OsAffx.24864.1.S1_x_at11/112+33340465..33341388hypro1, putative, expressed
LOC_Os02g54430OsAffx.9060.1.S1_at6/112+33343419..33345131transposon protein, putative, Pong sub-class
LOC_Os02g54440Os.41074.1.S1_at3/112+33345609..33347572transposon protein, putative, Pong sub-class
LOC_Os02g54450OsAffx.3069.1.S1_at11/112+33348307..33349248hypro1, putative
LOC_Os02g54460NANA2+33350361..33351483hypothetical protein
LOC_Os02g54470Os.4986.1.S1_at10/112+33353475..3335552560S ribosomal protein L33-B, putative, expressed
LOC_Os02g54480OsAffx.24866.2.S1_at11/112+33356001..33357978hypothetical protein
LOC_Os02g54480OsAffx.24866.1.S1_at4/112+33356001..33357978hypothetical protein
LOC_Os02g54490OsAffx.3070.1.S1_at11/112+33358394..33365118expressed protein
LOC_Os02g54500Os.7331.2.S1_s_at11/112+33366546..33374358expressed protein
LOC_Os02g54500OsAffx.12639.1.S1_at11/112+33366546..33374358expressed protein
LOC_Os02g54500Os.7331.1.A1_at10/112+33366546..33374358expressed protein
LOC_Os02g54500Os.49132.1.S1_at6/112+33366546..33374358expressed protein
LOC_Os02g54510Os.22443.1.S1_at9/112+33380785..33387027Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24866.2.S1_at--1116--751Chr02:33357099..33357123 (25 bp)
ATGTCACGAGCTGGAGAATTCGTCA
LOC_Os02g54480
OsAffx.24866.2.S1_at--1017--5171Chr02:33356988..33357012 (25 bp)
GACGGAACGTACAGAGGTAACACAA
LOC_Os02g54480
OsAffx.24866.2.S1_at--372--6391Chr02:33356934..33356958 (25 bp)
GATCGGGCTGGCTCAATCCTTCAGG
LOC_Os02g54480
OsAffx.24866.2.S1_at--902--3831Chr02:33356849..33356873 (25 bp)
CTGCTGCAATCAAGGCTGCAAGCGA
LOC_Os02g54480
OsAffx.24866.2.S1_at--466--5551Chr02:33356472..33356850 (25 bp)
GAAAGGGTTACAACGCTCTCAATCA
LOC_Os02g54480
OsAffx.24866.2.S1_at--139--3771Chr02:33356457..33356481 (25 bp)
CTCTCAATCACACGCACTGATGGTA
LOC_Os02g54480
OsAffx.24866.2.S1_at--778--7011Chr02:33356435..33356459 (25 bp)
GTACTATGAACCGATCTAACCCTGC
LOC_Os02g54480
OsAffx.24866.2.S1_at--840--6371Chr02:33356423..33356447 (25 bp)
GATCTAACCCTGCTAGGAATTTCAA
LOC_Os02g54480
OsAffx.24866.2.S1_at--461--2191Chr02:33356403..33356423 (21 bp)
ACAAACGGTTGGCACGCAGGTCAGA
LOC_Os02g54480
OsAffx.24866.2.S1_at--798--5011Chr02:33356215..33356239 (25 bp)
GCAGGTCAGACGACGAGCGATTCAG
LOC_Os02g54480
OsAffx.24866.2.S1_at--578--4171Chr02:33356085..33356109 (25 bp)
CGCCATGCTCGGTGTCAATCAGGGA
LOC_Os02g54480
Target Sequence 
ATGTCACGAGCTGGAGAATTCGTCAGGATGAACGCAAAGGACAAAAATCCCAGAACAGGAGAGTGTGCAGTTTGGAGATG
GCCACCTCTGAACTTTGTGAAAATCAATACTGACGGAACGTACAGAGGTAACACAAAGCAGGGAGGATGGGGCTTTGTGA
TCAGGGATCGGGCTGGCTCAATCCTTCAGGCAGGAGCTGGTCCGGCAGCTCATCTACAAGACGCCTTCCATGCTGAAGTT
ATCGCCTGTGCTGCTGCAATCAAGGCTGCAAGCGAAAGGGTTACAACGCTCTCAATCACACGCACTGATGGTACTATGAA
CCGATCTAACCCTGCTAGGAATTTCAACAAACGGTTGGCACGCAGGTCAGACGACGAGCGATTCAGAGGAGGAACCAGAG
ACGATACCTGGAAGGGGATGGGCTTGTCGAACTGGAGCTGGAACGGCGTGGCCGCCGCCCCCGCCGTCGACGCCTCCTCC
ATCTGCTCTTCCGCCATGCTCGGTGTCAATCAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24866.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis