Browse Element(s) Details


OsAffx.24880.1.S1_at

Description tigr:9630.m05485
TID=OsAffx.24880.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5521011/11carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55150OsAffx.24878.1.S1_at11/112+33780355..33785071formin homology 2 domain-containing protein, putative, expressed
LOC_Os02g55160OsAffx.12650.1.S1_at11/112+33785317..33786760expressed protein
LOC_Os02g55170OsAffx.24879.1.S1_at11/112+33787265..33788936formin homology 2 domain-containing protein, putative
LOC_Os02g55180Os.24797.1.A1_at11/112+33791497..33797992Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g55190Os.50902.1.S1_at10/112+33799150..33800616expressed protein
LOC_Os02g55200Os.32481.1.S1_s_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.10314.1.S1_a_at11/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.2.S1_x_at6/112+33801145..33809546expressed protein
LOC_Os02g55200Os.32481.1.S1_at5/112+33801145..33809546expressed protein
LOC_Os02g55210OsAffx.24880.1.S1_at11/112+33809943..33812507carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55220OsAffx.3077.1.S1_at11/112+33815753..33817887hypothetical protein
LOC_Os02g55230OsAffx.12651.1.S1_at11/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55230OsAffx.3076.1.S1_s_at1/112+33818582..33822379carboxyl-terminal peptidase, putative, expressed
LOC_Os02g55240OsAffx.24881.1.S1_at10/112+33823002..33823853hypothetical protein
LOC_Os02g55250OsAffx.27510.1.S1_at11/112+33828040..33832179Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g55260Os.24391.1.A1_at11/112+33832794..33837763DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24880.1.S1_at--306--8131Chr02:33811110..33811134 (25 bp)
GGACAACTTTGTCAGGTTTCACATT
LOC_Os02g55210
OsAffx.24880.1.S1_at--336--6831Chr02:33810963..33811119 (25 bp)
GTTTCACATTCGTTGGGTAGACAGT
LOC_Os02g55210
OsAffx.24880.1.S1_at--470--6831Chr02:33810854..33810878 (25 bp)
GTTTCTATCTACAATGGGCCTCAGT
LOC_Os02g55210
OsAffx.24880.1.S1_at--1023--351Chr02:33810827..33810851 (25 bp)
ATAATTACCGTCATGCTGTTTCAGG
LOC_Os02g55210
OsAffx.24880.1.S1_at--698--2811Chr02:33810295..33810319 (25 bp)
AAGATTGGTGGCTAGCACGCCTAGA
LOC_Os02g55210
OsAffx.24880.1.S1_at--686--1811Chr02:33810279..33810303 (25 bp)
ACGCCTAGACAAGAGCAGTGCCATT
LOC_Os02g55210
OsAffx.24880.1.S1_at--334--7271Chr02:33810262..33810286 (25 bp)
GTGCCATTGGATATCGACCACTTGG
LOC_Os02g55210
OsAffx.24880.1.S1_at--65--6091Chr02:33810228..33810252 (25 bp)
GAGTAAGCTCTTTGACACCCTACAA
LOC_Os02g55210
OsAffx.24880.1.S1_at--1097--791Chr02:33810174..33810198 (25 bp)
ATGGGTTCGTGGACCAACTGTTTCA
LOC_Os02g55210
OsAffx.24880.1.S1_at--632--6831Chr02:33810155..33810179 (25 bp)
GTTTCATTAGATCCTCCACCAATGG
LOC_Os02g55210
OsAffx.24880.1.S1_at--537--7831Chr02:33810032..33810056 (25 bp)
GGTAAGGCCACTACAGTGACCACTA
LOC_Os02g55210
Target Sequence 
GGACAACTTTGTCAGGTTTCACATTCGTTGGGTAGACAGTTCAAATAAGCCATGCTATGATTTTAATTGTCCTGGTTTTG
TGCAAGTTAGCCAACTTGCTGGTATTGGAGGGAAAATAACACCGGTTTCTATCTACAATGGGCCTCAGTATATAATTACC
GTCATGCTGTTTCAGGACCGAAAGACTAAAGATTGGTGGCTAGCACGCCTAGACAAGAGCAGTGCCATTGGATATCGACC
ACTTGGATATTGGCCGAGTAAGCTCTTTGACACCCTACAAGAGAAGGCTACATATGCATTTTGGGGTGGATGGGTTCGTG
GACCAACTGTTTCATTAGATCCTCCACCAATGGGGAGCGGCCATTTCGCCAAAGAGGGGTATAGGAAAGCCGCACTTGTG
AAGGGTATCAGGATAGCCAACAAGGACAACAACTTTGTCAATCCAAACGTTGGTAAGGCCACTACAGTGACCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis