Browse Element(s) Details


OsAffx.24902.1.S1_s_at

Description tigr:9630.m05660
TID=OsAffx.24902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytidylyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5698011/11nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os03g414701/11hypothetical protein
LOC_Os09g178701/11Cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56960Os.57452.1.S1_x_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960Os.12109.1.S1_at11/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56960OsAffx.27834.1.S1_at1/112+34905178..3490761660S ribosomal protein L23, putative, expressed
LOC_Os02g56970Os.56323.1.S1_at11/112+34907845..34909606glutathione S-transferase C-terminal domain-containing protein, putative, expressed
LOC_Os02g56980OsAffx.24902.1.S1_s_at11/112+34909928..34912117nicotinamide-nucleotide adenylyltransferase, putative, expressed
LOC_Os02g56990Os.8300.1.S1_at11/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g56990Os.8300.1.S1_s_at10/112+34912253..3491400960S ribosomal protein L37, putative, expressed
LOC_Os02g57000Os.55773.1.S1_at11/112+34914673..34915867C2 domain containing protein, expressed
LOC_Os02g57010Os.52459.1.S1_at11/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57010Os.32596.1.S1_x_at1/112+34916635..3491894029 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os02g57020Os.51208.1.S1_s_at11/112+34919502..34920398expressed protein
LOC_Os02g57030OsAffx.12677.1.S1_at11/112+34920772..34923516expressed protein
LOC_Os02g57030Os.5432.1.A1_at10/112+34920772..34923516expressed protein
LOC_Os02g57030Os.28544.2.S1_x_at1/112+34920772..34923516expressed protein
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0000309molecular_functionnicotinamide-nucleotide adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24902.1.S1_s_at--520--3692Chr09:10928408..10928432 (25 bp)
CTTTGGTGTTATTTGCATACGTAGA
LOC_Os09g17870
OsAffx.24902.1.S1_s_at--991--8712Chr03:23029256..23029276 (21 bp)
TGTTCCAAATCAAATAAGTTCGTCT
LOC_Os03g41470
OsAffx.24902.1.S1_s_at--480--1591Chr02:34910276..34910300 (25 bp)
AGCTGACGGCAGTGATACAAGAAAA
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--1009--3171Chr02:34910248..34910272 (25 bp)
CAATAAAGGGTCCAGTGCAGGCAAT
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--368--6791Chr02:34910189..34910213 (25 bp)
GTTAGGTGCCTGTTTTATAGCTAAT
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--637--931Chr02:34910164..34910188 (25 bp)
AGGCAAATGTTGTACCCTGGGCATC
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--972--4251Chr02:34910149..34910173 (25 bp)
CCTGGGCATCTGTTTTGGGATATAC
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--957--6471Chr02:34910005..34910029 (25 bp)
GATACTTGTCAGCAGTTGTACTCCA
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--1--6631Chr02:34909991..34910015 (25 bp)
GTTGTACTCCAACATGTAATGCTGG
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--506--7071Chr02:34909976..34910000 (25 bp)
GTAATGCTGGACATATTTCCTACAA
LOC_Os02g56980
OsAffx.24902.1.S1_s_at--404--9251Chr02:34909959..34909983 (25 bp)
TCCTACAAAGCTTCATTGTGTCCAT
LOC_Os02g56980
Target Sequence 
CTTTGGTGTTATTTGCATACGTAGAGAAGGAAAAGATGTTGAAAAAATAATATCCAGCAGTGAGATACTGAACGAATGCA
GGGATAATATTATTTCAGTTGATGAGATTGTTCCAAATCAAATAAGTTCGTCTAGAGTAAGAGAATGCATAAAAAAATGC
CTATCAATAAAGTATCTTGTATGTGATGAAGTCATCCAGTATATTGGAGAACACAAACTCTACAAGGAAGCTGACGGCAG
TGATACAAGAAAATGACAATAAAGGGTCCAGTGCAGGCAATCTGAATATAGACCTTAATATATTCACGGTTAAATGTTAG
GTGCCTGTTTTATAGCTAATAGGCAAATGTTGTACCCTGGGCATCTGTTTTGGGATATACAACTGAATTGGATGATGAGA
AGCATTTGTTTTATTTACAAAAATGAAACATTTCGAAATAAAAAGAGCACCTGCTAATTGCATGTTGACTGGAAGTTGTA
TCATAATACAGATAGATGAGATACTTGTCAGCAGTTGTACTCCAACATGTAATGCTGGACATATTTCCTACAAAGCTTCA
TTGTGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24902.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis