Browse Element(s) Details


OsAffx.24903.1.S1_at

Description tigr:9630.m05674
TID=OsAffx.24903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anthranilate phosphoribosyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5709011/11C2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57040Os.407.1.S1_at11/112+34924454..34928296Alcohol dehydrogenase class III, putative, expressed
LOC_Os02g57050Os.18150.1.S1_at11/112+34928691..34931108diphthamide synthesis protein, putative, expressed
LOC_Os02g57060Os.9385.1.S1_at11/112+34932239..34935532D1 protease precursor, putative, expressed
LOC_Os02g57070Os.54808.1.S1_at11/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57070Os.11168.1.S1_at1/112+34935197..349382063'-5' exoribonuclease CSL4 homolog, putative, expressed
LOC_Os02g57080Os.52783.1.A1_x_at11/112+34939213..34946140protein kinase family protein, putative, expressed
LOC_Os02g57090OsAffx.24903.1.S1_at11/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57090Os.47315.1.S1_x_at1/112+34952452..34955451C2 domain-containing protein, putative
LOC_Os02g57100Os.49415.1.S1_at11/112+34957766..34960733haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os02g57110Os.8666.1.S1_at11/112+34961728..34963392GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g57120Os.9894.1.S1_at11/112+34976306..34984006HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24903.1.S1_at--627--8751Chr02:34954860..34954884 (25 bp)
TGTACTCTCTGGACCGATCACTATT
LOC_Os02g57090
OsAffx.24903.1.S1_at--641--1311Chr02:34954888..34954912 (25 bp)
AGATGGTTTGAACTTGTCCGCTCTT
LOC_Os02g57090
OsAffx.24903.1.S1_at--665--131Chr02:34954944..34954968 (25 bp)
ATTCACATTCCTGGTGTTTGTCACA
LOC_Os02g57090
OsAffx.24903.1.S1_at--81--6871Chr02:34954959..34954983 (25 bp)
GTTTGTCACAATGCCGGAGCTGATT
LOC_Os02g57090
OsAffx.24903.1.S1_at--438--8071Chr02:34954974..34954998 (25 bp)
GGAGCTGATTCTTCCGACGGCATTC
LOC_Os02g57090
OsAffx.24903.1.S1_at--519--10111Chr02:34955021..34955045 (25 bp)
TATGGAGGTACCGTGTCCGCTCAAG
LOC_Os02g57090
OsAffx.24903.1.S1_at--485--1011Chr02:34955068..34955092 (25 bp)
AGGTTGTCTCATGCAGACGCAGCCA
LOC_Os02g57090
OsAffx.24903.1.S1_at--391--6291Chr02:34955143..34955167 (25 bp)
GATGTTGTGCGCTTCAGGTATGACC
LOC_Os02g57090
OsAffx.24903.1.S1_at--432--8931Chr02:34955256..34955280 (25 bp)
TGACCCGAGGGCAACAGTGCTTTTC
LOC_Os02g57090
OsAffx.24903.1.S1_at--359--7271Chr02:34955293..34955317 (25 bp)
GTCCTTGCTGCGGTCATTGCATATA
LOC_Os02g57090
OsAffx.24903.1.S1_at--233--8771Chr02:34955354..34955378 (25 bp)
TGTATGCTATGCGTCCGCCAAGATT
LOC_Os02g57090
Target Sequence 
TGTACTCTCTGGACCGATCACTATTGGCAGATGGTTTGAACTTGTCCGCTCTTGGAATCGCCCGGTGCATTCATGCCTTG
CTGTATTCACATTCCTGGTGTTTGTCACAATGCCGGAGCTGATTCTTCCGACGGCATTCTTGGCAATGGCATTCACTGGG
TTATGGAGGTACCGTGTCCGCTCAAGGCACCCGCCCCACATGGAGATGAGGTTGTCTCATGCAGACGCAGCCACTGTGGA
TGAGCTAGATGAGGAGTTTGACACATTCCCTTCGAGCAGGGGAGATGTTGTGCGCTTCAGGTATGACCGCCTTCGCAGCG
TTGCTGGGAGGGTGCAGACAGTGGTTGGCGACATAGCAACACAGGGTGAGCGAATGCAGGCCCTTCTCAGCTGGCGTGAC
CCGAGGGCAACAGTGCTTTTCTCGATCGCCTGTGTCCTTGCTGCGGTCATTGCATATACCATTCCGATGAAGGTGCTGGT
TGGGCTCTGGGGCCTGTATGCTATGCGTCCGCCAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis