Browse Element(s) Details


OsAffx.24906.1.S1_x_at

Description tigr:9630.m05735
TID=OsAffx.24906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5757011/11MatE family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed
LOC_Os02g57540Os.6282.1.S1_at11/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.1.S1_a_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57540Os.7054.2.S1_x_at1/112+35250300..35252362Ribosomal L28e protein family protein, expressed
LOC_Os02g57550OsAffx.12680.1.S1_at11/112+35255389..35255976hypothetical protein
LOC_Os02g57560Os.49855.1.S1_at11/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57560OsAffx.30454.1.S1_x_at1/112+35257337..35259524Protein kinase domain containing protein, expressed
LOC_Os02g57570OsAffx.24906.1.S1_x_at11/112+35261791..35262961MatE family protein
LOC_Os02g57570OsAffx.24906.1.S1_at11/112+35261791..35262961MatE family protein
LOC_Os02g57580OsAffx.24907.1.S1_at11/112+35263349..35264388hypothetical protein
LOC_Os02g57580Os.9626.2.S1_x_at1/112+35263349..35264388hypothetical protein
LOC_Os02g57590Os.53192.1.S1_s_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57590Os.47666.1.S1_at11/112+35265730..35268909Fibrillarin-2, putative, expressed
LOC_Os02g57600Os.10392.1.S1_at11/112+35269321..35272692expressed protein
LOC_Os02g57600OsAffx.31551.1.S1_at1/112+35269321..35272692expressed protein
LOC_Os02g57610Os.19574.1.S1_at11/112+35274698..35278609hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g57620Os.19186.1.S1_at11/112+35280919..35284836expressed protein
LOC_Os02g57630Os.7211.1.S1_a_at11/112+35287543..35290686Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24906.1.S1_x_at--1115--4951Chr02:35262387..35262411 (25 bp)
GCATCTACATGCAGCGCTCGTGGAT
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--827--8031Chr02:35262514..35262538 (25 bp)
GGAGTTCACGGTGCGGATCATCCCG
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--1076--7951Chr02:35262528..35262552 (25 bp)
GGATCATCCCGCAGATGTTCGCGCT
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--876--1911Chr02:35262602..35262626 (25 bp)
ACGGTGCTGGCCTGGATCGGCTTCG
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--699--3911Chr02:35262781..35262805 (25 bp)
GGGCCTGTCCCGCAAGGCGTTCAAC
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--98--5191Chr02:35262792..35262816 (25 bp)
GCAAGGCGTTCAACGAGCTCTGGGC
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--694--891Chr02:35262795..35262819 (25 bp)
AGGCGTTCAACGAGCTCTGGGCCTT
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--833--9711Chr02:35262801..35262825 (25 bp)
TCAACGAGCTCTGGGCCTTCGTCAA
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--701--4071Chr02:35262805..35262829 (25 bp)
CGAGCTCTGGGCCTTCGTCAAGCTC
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--897--10091Chr02:35262864..35262888 (25 bp)
TATGGTACATGATGGTGCTCGTCGT
LOC_Os02g57570
OsAffx.24906.1.S1_x_at--747--8591Chr02:35262866..35262890 (25 bp)
TGGTACATGATGGTGCTCGTCGTCC
LOC_Os02g57570
Target Sequence 
GCATCTACATGCAGCGCTCGTGGATCATCCTCGCCGCCTCCGCCGCGCTGCTCTCGCCGCTCTACGTCTTCGCGGGGCCC
ATCCTGCGGCTGCTGGGGCAGGAGGAGAGCATCGCCGCCGCCGCGGGGGAGTTCACGGTGCGGATCATCCCGCAGATGTT
CGCGCTCGCCATCAACTTCCCCACGCAGAAGTTCCTCCAGGCGCAGAGCAAGGTGACGGTGCTGGCCTGGATCGGCTTCG
CGGCGCTCCTCGCCCACGTCGGCCTCCTCGCCCTCTTCGTCTCCGCGCTCGGCTGGGGCATCGCCGGCGCCGCCGCCGCG
TACGACGTCTCCTCCTGGCTCACCGCGCTGGCGCAGGTGGCCTACGTCGTCGGCTGGTGCCGCGACGGCTGGACGGGCCT
GTCCCGCAAGGCGTTCAACGAGCTCTGGGCCTTCGTCAAGCTCTCCCTCGCCTCCGCCGTCATGCTCTGCCTCGAGATAT
GGTACATGATGGTGCTCGTCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24906.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis