Browse Element(s) Details


OsAffx.24916.1.S1_at

Description tigr:9630.m05791
TID=OsAffx.24916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5804010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24916.1.S1_at--693--4451Chr02:35529363..35529387 (25 bp)
GCCTATGTTCATTGGGACTGTCACG
LOC_Os02g58040
OsAffx.24916.1.S1_at--283--231NONE
ATATTTGGGTTCGTCCAGAATGCCC
NONE
OsAffx.24916.1.S1_at--15--1571Chr02:35528763..35528787 (25 bp)
AGCTACTAGGGCCTGTGTTCCACAA
LOC_Os02g58040
OsAffx.24916.1.S1_at--1015--2211Chr02:35528742..35528766 (25 bp)
ACAAGCTGCAGCGTGTGAGTCTCGT
LOC_Os02g58040
OsAffx.24916.1.S1_at--501--7391Chr02:35528728..35528752 (25 bp)
GTGAGTCTCGTTGATGTTCCTGAAG
LOC_Os02g58040
OsAffx.24916.1.S1_at--547--1251Chr02:35528561..35528585 (25 bp)
AGATTGGGAATCATCTGCACCTGAT
LOC_Os02g58040
OsAffx.24916.1.S1_at--807--10151Chr02:35528517..35528541 (25 bp)
TATCTAAGGTCACCATCTATGGCTT
LOC_Os02g58040
OsAffx.24916.1.S1_at--129--3271Chr02:35528480..35528504 (25 bp)
CAACTTGGTGGGATTCGTTAGGCGT
LOC_Os02g58040
OsAffx.24916.1.S1_at--380--5951Chr02:35528398..35528422 (25 bp)
GAGAATTGCGGTGATCTGGATCCTA
LOC_Os02g58040
OsAffx.24916.1.S1_at--564--6451Chr02:35528372..35528396 (25 bp)
GATCAAGATGAAGGTTTCCCCGTCA
LOC_Os02g58040
OsAffx.24916.1.S1_at--375--6831Chr02:35528359..35528383 (25 bp)
GTTTCCCCGTCAAGATATCCGTGTA
LOC_Os02g58040
Target Sequence 
GCCTATGTTCATTGGGACTGTCACGGGGACCCCTTGTCTTTTGGGGATATTTGGGTTCGTCCAGAATGCCCAAAGCTACT
AGGGCCTGTGTTCCACAAGCTGCAGCGTGTGAGTCTCGTTGATGTTCCTGAAGGATGCAACATTGATTGGACAATGTTCA
TTCTTGAAGCTGCACCCTCCCTAAAGGAGATATGCATTACAATATGGGATCGTTGGTGCAACATGAAAACTGAAGAGGAC
AGGAGGGAGGAGGGTTATGGTGACAAAACAGTTGTAGATTGGGAATCATCTGCACCTGATGGTTTCAGGCACGAGAACCT
ATCTAAGGTCACCATCTATGGCTTCCAACCCGACGACAACTTGGTGGGATTCGTTAGGCGTGTGATGGAAGTGGCAGTTA
ATCTAGAGGAGGTATCCCTATATGACAGGAAGGTCTGTGAGAATTGCGGTGATCTGGATCCTAAGATCAAGATGAAGGTT
TCCCCGTCAAGATATCCGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis