Browse Element(s) Details


OsAffx.24927.1.S1_x_at

Description tigr:9637.m02392
TID=OsAffx.24927.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5876011/11hypothetical protein
LOC_Os09g2729011/11hypothetical protein
LOC_Os01g066907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58710NANA2+35861208..35866474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g58720Os.47418.1.S1_a_at11/112+35869701..35871108Peroxidase 64 precursor, putative, expressed
LOC_Os02g58730Os.4376.1.S1_at11/112+35874978..35879805RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g58740Os.50023.1.S1_at11/112+35884564..35885576expressed protein
LOC_Os02g58740Os.50023.1.S1_x_at11/112+35884564..35885576expressed protein
LOC_Os02g58750OsAffx.12694.1.S1_at10/112+35887406..35889167hypothetical protein
LOC_Os02g58750Os.39421.1.S1_at3/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.20967.1.S1_x_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58750OsAffx.30352.1.S1_at1/112+35887406..35889167hypothetical protein
LOC_Os02g58760OsAffx.24927.1.S1_x_at11/112+35891145..35892771hypothetical protein
LOC_Os02g58760OsAffx.24927.2.S1_x_at5/112+35891145..35892771hypothetical protein
LOC_Os02g58770Os.40855.2.S1_x_at10/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.30352.2.S1_at7/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40855.4.S1_x_at4/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770Os.40360.1.S1_x_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58770OsAffx.3900.1.S1_at1/112+35895109..35905682retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.3.S1_at6/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780Os.39421.1.S1_at5/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.4.S1_at4/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.20967.1.S1_x_at1/112+35908944..35915032retrotransposon protein, putative, unclassified
LOC_Os02g58780OsAffx.30352.1.S1_at1/112+35908944..35915032retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24927.1.S1_x_at--244--4793Chr09:16591996..16592020 (25 bp)
GCTGCCACCGCTGCATGGGAAAATA
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--750--5492Chr09:16592014..16592038 (25 bp)
GAAAATAGTTACGAGCTTGGACGCC
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--416--5812Chr09:16592033..16592057 (25 bp)
GACGCCCCGCAGACTTGGAGAAGTT
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--782--5473Chr09:16592123..16592147 (25 bp)
GAACTTTAGCTGCTCATGAAGGCGA
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--795--4053Chr09:16592145..16592169 (25 bp)
CGAGGCGCGCTCTTCCTTAGCAAAG
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--7--6032Chr09:16592173..16592197 (25 bp)
GAGAGTGCGTGTTCAGACGTGCTAC
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--28--1393Chr09:16592199..16592223 (25 bp)
AGACCTTGACCTCCTCAAGAGTGGC
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--218--7972Chr09:16592241..16592265 (25 bp)
GGATCTTCAGAAGTCCAAGCAAGCA
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--362--5313Chr09:16592325..16592349 (25 bp)
GAAGGAGCACCAGTGTTTGGAATCA
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--36--8473Chr09:16592498..16592522 (25 bp)
TGGCCGCCATTCTATCATATCGTAG
LOC_Os09g27290
OsAffx.24927.1.S1_x_at--800--413Chr09:16592511..16592535 (25 bp)
ATCATATCGTAGAGAATCGGCGCCT
LOC_Os09g27290
Target Sequence 
GCTGCCACCGCTGCATGGGAAAATAGTTACGAGCTTGGACGCCCCGCAGACTTGGAGAAGTTGATGTCTTACTTGGGGGC
ACTTGTGCAACNTCTTAAGGGAGAGCTCCCNGTAACCTTTGAAGGGAGAACTTTAGCTGCTCATGAAGGCGAGGCGCGCT
CTTCCTTAGCAAAGNTNGAGAGTGCGTGTTCAGACGTGCTACNAGACCTTGACCTCCTCAAGAGTGGCNGTGAAGACGTG
GCCGCGGATCTTCAGAAGTCCAAGCAAGCANGGGCTACCTGGAAGAAAGAGGCGGAGGAACACGAGCTGAAAGCCAAAGA
TGCGAGGGAGAAGGAGCACCAGTGTTTGGAATCAGAGGAGGCAGCCGCCAAGAACCNGCAAGTTTATGATAGTACCATCG
ANGGCGTCANGCANCTGATAAAGCGTCGTGACGAGGCGAAGGTCTATTTGGGGCATCTTGCTGAAGAGAGGAAACGCCTT
GCAGTGGCCGNGCCGCCAGAGGTGGCCGCCATTCTATCATATCGTAGAGAATCGGCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis