Browse Element(s) Details


OsAffx.24943.1.S1_at

Description tigr:9631.m00157
TID=OsAffx.24943.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=60Kd inner membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0248011/1160Kd inner membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed
LOC_Os03g02500NANA3+895794..899947retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g02514OsAffx.3113.1.S1_s_at11/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02514Os.5557.1.S1_at10/113+901040..906534hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g02530Os.22610.1.S1_at11/113+910586..913120membrane protein, putative, expressed
LOC_Os03g02530Os.48102.1.A1_s_at11/113+910586..913120membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24943.1.S1_at--423--7051Chr03:886633..886657 (25 bp)
GTAACTCCACTGACACCATTGAAGG
LOC_Os03g02480
OsAffx.24943.1.S1_at--835--7811Chr03:886657..886681 (25 bp)
GGTCTATTCATCCAAGCACCTATAT
LOC_Os03g02480
OsAffx.24943.1.S1_at--635--691Chr03:886684..886831 (25 bp)
ATGAGCTTTTTCTTTGCCATATCAA
LOC_Os03g02480
OsAffx.24943.1.S1_at--732--1531Chr03:886904..886928 (25 bp)
AGCTTTTAATTCTCCCAATGTTGAC
LOC_Os03g02480
OsAffx.24943.1.S1_at--296--8951Chr03:886925..886949 (25 bp)
TGACATCGCTTACTTTCTTGGTTAC
LOC_Os03g02480
OsAffx.24943.1.S1_at--1049--10451Chr03:887134..887154 (21 bp)
TTACGATGAGCTTTCCCAAGGCAAT
LOC_Os03g02480
OsAffx.24943.1.S1_at--941--8211Chr03:887678..887702 (25 bp)
GGCAATTTTCTTTTACTGGGTCACA
LOC_Os03g02480
OsAffx.24943.1.S1_at--415--1951Chr03:887692..887716 (25 bp)
ACTGGGTCACATCGAACTTGTTCTC
LOC_Os03g02480
OsAffx.24943.1.S1_at--330--2071Chr03:887707..887731 (25 bp)
ACTTGTTCTCTCTTGGGTATGGTTT
LOC_Os03g02480
OsAffx.24943.1.S1_at--723--10851Chr03:887912..887936 (25 bp)
TTGGTGCATCCAAGTCAGTACCTGC
LOC_Os03g02480
OsAffx.24943.1.S1_at--1101--9791Chr03:887981..888005 (25 bp)
TAAGCCAGCGGTTCAGCGATCTTGA
LOC_Os03g02480
Target Sequence 
GTAACTCCACTGACACCATTGAAGGGTCTATTCATCCAAGCACCTATATTCATGAGCTTTTTCTTTGCCATATCAAACAT
GGTTGAGAAAGTTCCTTCTTTCAAAGGAGGCGGGATATATTGGTTTACTGATTTGACAACTCCTGATGAGCTTTTAATTC
TCCCAATGTTGACATCGCTTACTTTCTTGGTTACGGTAGAGTTAAATATGCAAGATGGCATGGAAGGAAATCCTATGTTG
AAGACGATGAAGAATTTCTCTAGAGTAATGGCTGTTTTGACTATTCCATTTACGATGAGCTTTCCCAAGGCAATTTTCTT
TTACTGGGTCACATCGAACTTGTTCTCTCTTGGGTATGGTTTTGTTCTTCGGAAGCCAGCTGTGAGGAGTTTCTTAGATC
TTCCTCCCATCGAAACTCAGTTTGCTCCGGCTCAACAGCCGACCTTCAACCTTTTTGGTGCATCCAAGTCAGTACCTGCA
GCAGGTTCTTCTATTGCAGAATCAGATCGATCAAGTTCTGTTCTAAGCCAGCGGTTCAGCGATCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis