Browse Element(s) Details


OsAffx.24967.2.S1_at

Description tigr:9631.m00401
TID=OsAffx.24967.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0485011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04820OsAffx.21870.3.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04820OsAffx.21870.2.S1_x_at5/113+2270543..2271334hypothetical protein
LOC_Os03g04830Os.54272.1.S1_at11/113+2274461..2278949expressed protein
LOC_Os03g04840OsAffx.24967.1.S1_at11/113+2281709..2285918expressed protein
LOC_Os03g04850OsAffx.24967.2.S1_at11/113+2292594..2293712hypothetical protein
LOC_Os03g04860OsAffx.22848.4.S1_at2/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04860OsAffx.22848.4.S1_x_at1/113+2297836..2303796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g04870Os.55673.1.S1_at10/113+2307979..2310711expressed protein
LOC_Os03g04890Os.53815.1.S1_at9/113+2315900..2320767zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24967.2.S1_at--1008--2711Chr03:2293179..2293203 (25 bp)
AAGCACGAGCACAAGCTGTCGGAGA
LOC_Os03g04850
OsAffx.24967.2.S1_at--521--5031Chr03:2293204..2293228 (25 bp)
GCAGTAATGATCAGCAGTCGTCGTC
LOC_Os03g04850
OsAffx.24967.2.S1_at--320--5891Chr03:2293271..2293295 (25 bp)
GAGCGGTAGTACATCGACAGACATT
LOC_Os03g04850
OsAffx.24967.2.S1_at--80--8391Chr03:2293302..2293326 (25 bp)
GGCGAGCAGGGCTTCCACATGAAGA
LOC_Os03g04850
OsAffx.24967.2.S1_at--542--5191Chr03:2293325..2293349 (25 bp)
GAATTACAACTACCTCATCGTCGGC
LOC_Os03g04850
OsAffx.24967.2.S1_at--358--3471Chr03:2293453..2293477 (25 bp)
CAGGGAATCTGCTCGGGCCTGATAA
LOC_Os03g04850
OsAffx.24967.2.S1_at--70--4531Chr03:2293483..2293507 (25 bp)
GCCGCTACAAGCTGAAGGACGTCTG
LOC_Os03g04850
OsAffx.24967.2.S1_at--63--2831Chr03:2293542..2293566 (25 bp)
AAGTTCGCCGGCGTTGAGGCAACGA
LOC_Os03g04850
OsAffx.24967.2.S1_at--823--5271Chr03:2293580..2293604 (25 bp)
GAAGGCGCGGAAGCTCGTCTTCGAC
LOC_Os03g04850
OsAffx.24967.2.S1_at--944--5651Chr03:2293620..2293644 (25 bp)
GACATCGACGAGGAGCGGACGTTTC
LOC_Os03g04850
OsAffx.24967.2.S1_at--1084--6831Chr03:2293640..2293664 (25 bp)
GTTTCGAGTTATCCGAGCAGAGCTC
LOC_Os03g04850
Target Sequence 
AAGCACGAGCACAAGCTGTCGGAGAGCAGTAATGATCAGCAGTCGTCGTCGGAGAGCAGTACAGACACTGAAGCTGCAGG
TGAGCACGAGTTGAGCGGTAGTACATCGACAGACATTGAAGCTGGCGAGCAGGGCTTCCACATGAAGAATTACAACTACC
TCATCGTCGGCGACTCCAAGTTGGATGGAGAGAAGAACACAACCCGGGGGATCTACGAGCCAGAGTTGAAACCGGTGACC
CACACGGTCACCGTCGCCAAGGTGTGGGAATACCCAGGGAATCTGCTCGGGCCTGATAAGAAGGGCCGCTACAAGCTGAA
GGACGTCTGCTTGTCCTTCGCCCTCTGCAAGCTGCTGAGGCGGAAGTTCGCCGGCGTTGAGGCAACGAAGATCGAGCTGC
GGAAGGCGCGGAAGCTCGTCTTCGACGGCCTCATCACGAGCGACATCGACGAGGAGCGGACGTTTCGAGTTATCCGAGCA
GAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24967.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis