Browse Element(s) Details


OsAffx.24986.1.S1_s_at

Description tigr:9631.m00516
TID=OsAffx.24986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AB036340 tRNA intron endonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3893011/11tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os03g0593011/11tRNA-splicing endonuclease, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
GO:0000214cellular_componenttRNA-intron endonuclease complex
GO:0000213molecular_functiontRNA-intron endonuclease activity
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24986.1.S1_s_at--1085--4832Chr11:22676592..22676616 (25 bp)
GCTAATCCCATGTCAGTCATTGTTG
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--1052--9632Chr11:22676664..22676688 (25 bp)
TCAGGTCCAGGTGGCGGTGCCATTC
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--560--10232Chr11:22676733..22676757 (25 bp)
TTTGGCCACGCCGTCGAAATTGCTG
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--256--7232Chr11:22676745..22676769 (25 bp)
GTCGAAATTGCTGCGGCACAGAAGC
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--87--8252Chr11:22676759..22676783 (25 bp)
GGCACAGAAGCACTGGTTCCAACTT
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--242--1952Chr11:22676770..22676794 (25 bp)
ACTGGTTCCAACTTAGCCCTGAGGA
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--448--3272Chr11:22676778..22676802 (25 bp)
CAACTTAGCCCTGAGGAGGTCTTCT
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--898--6712Chr11:22676814..22676838 (25 bp)
GTTCTGAACTGCATCAGGGTTGAGT
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--632--2732Chr11:22676865..22676889 (25 bp)
AAGCAACTGTGGAATCACTTCAGGT
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--880--2032Chr11:22676881..22676905 (25 bp)
ACTTCAGGTCCATGTCGGAGTCCTT
LOC_Os11g38930
OsAffx.24986.1.S1_s_at--243--7192Chr11:22676894..22676918 (25 bp)
GTCGGAGTCCTTTCCAGAGATGTAC
LOC_Os11g38930
Target Sequence 
GCTAATCCCATGTCAGTCATTGTTGCTGAGCTCAATGCCTCATTCATAAGCTCAAAGCCTGTGGCAATTTTGTCAGGTCC
AGGTGGCGGTGCCATTCTTGGAGTTGAGCCAAAACAAGCCGTGATCCTAAACCGTGCTGCCTTTGGCCACGCCGTCGAAA
TTGCTGCGGCACAGAAGCACTGGTTCCAACTTAGCCCTGAGGAGGTCTTCTACCTATGCCATGTTCTGAACTGCATCAGG
GTTGAGTCACGGGACAAGAAGCAGATGAGTGAAAAGCAACTGTGGAATCACTTCAGGTCCATGTCGGAGTCCTTTCCAGA
GATGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24986.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis