Browse Element(s) Details


OsAffx.24987.1.S1_at

Description tigr:9631.m00525
TID=OsAffx.24987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0602011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g06000Os.20535.1.S1_at11/113+2977966..2979110Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_x_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.8085.1.S1_x_at1/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06020OsAffx.24987.1.S1_at11/113+2985441..2986442Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06030NANA3+2997486..2997740hypothetical protein
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24987.1.S1_at--441--1291Chr03:2986079..2986103 (25 bp)
AGATCGCGTGCGACCACCAGGCCGA
LOC_Os03g06020
OsAffx.24987.1.S1_at--1020--4491Chr03:2986059..2986083 (25 bp)
GCCGAGCCGCGGTGGTGCCTGCAGG
LOC_Os03g06020
OsAffx.24987.1.S1_at--627--9531Chr03:2985902..2985926 (25 bp)
TCTACAAGGCCGGTATCGTGCCGGT
LOC_Os03g06020
OsAffx.24987.1.S1_at--903--4251Chr03:2985746..2985906 (25 bp)
CCGGTGCTGTACCAGAGGGTGCCGT
LOC_Os03g06020
OsAffx.24987.1.S1_at--1010--6691Chr03:2985704..2985728 (25 bp)
GTTCGGTTCACCATGGGAGGGTTCA
LOC_Os03g06020
OsAffx.24987.1.S1_at--587--5891Chr03:2985642..2985666 (25 bp)
GAGCGGGTCGATCCAGTCGGTGTGG
LOC_Os03g06020
OsAffx.24987.1.S1_at--514--2451Chr03:2985605..2985629 (25 bp)
AACACCGACAGGATGCCCCTGAGCA
LOC_Os03g06020
OsAffx.24987.1.S1_at--1066--5651Chr03:2985599..2985623 (25 bp)
GACAGGATGCCCCTGAGCAGGAACT
LOC_Os03g06020
OsAffx.24987.1.S1_at--711--9551Chr03:2985490..2985514 (25 bp)
TCTTCCAGAACATCGTGCCGGCGTG
LOC_Os03g06020
OsAffx.24987.1.S1_at--1094--9211Chr03:2985487..2985511 (25 bp)
TCCAGAACATCGTGCCGGCGTGGTG
LOC_Os03g06020
OsAffx.24987.1.S1_at--70--8371Chr03:2985471..2985495 (25 bp)
GGCGTGGTGGAAGTTCGGCCAGTCA
LOC_Os03g06020
Target Sequence 
AGATCGCGTGCGACCACCAGGCCGAGCCGCGGTGGTGCCTGCAGGGGAGGACGGTGACCATCACCGGGACCAACCTGTGC
CCGCCCAACTACGCCCTCTCCAGCAACGACGGCGGCTGGTGCAACCCGCCTCGCACGCACTTCGACATGGCCGAGCCCGC
CTGGCTCCAGATCGGCATCTACAAGGCCGGTATCGTGCCGGTGCTGTACCAGAGGGTGCCGTGCGTGAAGCAGGGAGGGG
TTCGGTTCACCATGGGAGGGTTCAACTACTTCGAGCTGGTGCTGATCTCGAACGTGGCCGGGAGCGGGTCGATCCAGTCG
GTGTGGGTGAAGGGGCCGAACACCGACAGGATGCCCCTGAGCAGGAACTGGGGCGCGAACTGGCAGTCGCACGCCGGCCT
CGTCGGCCAGACGCTCACCTTCGGCGTCACCTCCACCGGCGGCCAGACCCTCGTCTTCCAGAACATCGTGCCGGCGTGGT
GGAAGTTCGGCCAGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis