Browse Element(s) Details


OsAffx.25035.1.S1_at

Description tigr:9631.m00936
TID=OsAffx.25035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1026010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10220OsAffx.12806.1.S1_x_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.25146.1.A1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10220Os.49353.2.S1_at11/113+5179333..5182639Methyladenine glycosylase family protein, expressed
LOC_Os03g10230Os.49353.1.S1_at11/113+5185380..5190478expressed protein
LOC_Os03g10240Os.18318.1.S1_at10/113+5193230..5196769expressed protein
LOC_Os03g10250Os.21800.2.S1_at10/113+5197724..5198821expressed protein
LOC_Os03g10260OsAffx.25035.1.S1_at10/113+5204554..5205453hypothetical protein
LOC_Os03g10270Os.2741.4.S1_x_at2/113+5211963..5212769hypothetical protein
LOC_Os03g10280OsAffx.26548.1.S1_at6/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10280OsAffx.25036.1.S1_at5/113+5221538..5224861retrotransposon protein, putative, unclassified
LOC_Os03g10290OsAffx.25036.2.S1_at11/113+5225318..5228057hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25035.1.S1_at--1006--8531Chr03:5205384..5205408 (25 bp)
TGGACCACCTACCTGGACGATCACT
LOC_Os03g10260
OsAffx.25035.1.S1_at--337--6451Chr03:5205366..5205390 (25 bp)
GATCACTCGTCCTACTCCTGCGGGA
LOC_Os03g10260
OsAffx.25035.1.S1_at--1003--971Chr03:5205278..5205302 (25 bp)
AGGAGGACGACCTGTCCATGATCTC
LOC_Os03g10260
OsAffx.25035.1.S1_at--154--7171Chr03:5205106..5205130 (25 bp)
GTCTCTTCTCGAGGACACGGCAAGC
LOC_Os03g10260
OsAffx.25035.1.S1_at--1115--10491Chr03:5204981..5205093 (25 bp)
TTCAAGTACACCAATGCCTCCGCTG
LOC_Os03g10260
OsAffx.25035.1.S1_at--964--591NONE
ATGCCTCCGCTGAGGGCAATGGCTA
NONE
OsAffx.25035.1.S1_at--231--3351Chr03:5204751..5204895 (25 bp)
CACGACGGGCTTCGAGAGTCCCTTA
LOC_Os03g10260
OsAffx.25035.1.S1_at--742--10471Chr03:5204729..5204753 (25 bp)
TTAAACGGGATTCCCCTGAGTGGCT
LOC_Os03g10260
OsAffx.25035.1.S1_at--363--9311Chr03:5204718..5204742 (25 bp)
TCCCCTGAGTGGCTACCTGCAAATG
LOC_Os03g10260
OsAffx.25035.1.S1_at--210--1771Chr03:5204704..5204728 (25 bp)
ACCTGCAAATGCAGTACTCCACTAC
LOC_Os03g10260
OsAffx.25035.1.S1_at--703--751Chr03:5204677..5204701 (25 bp)
ATGTCAAGGCGATTCCCGCAAGACA
LOC_Os03g10260
Target Sequence 
TGGACCACCTACCTGGACGATCACTCGTCCTACTCCTGCGGGACCGCGCGGTTCCACGGCAAGGCGCAGCAGCCGTACTA
CCACTGCGACTACTCCGAGGACGCGGAGGAGGACGACCTGTCCATGATCTCCGACGCCTCCTCCGGCCCACGCCAGCAGT
GCTCCACCGGCAACGACGACGGCGCCGCCGCCGCCGCCGCGCATGCCAATGCGGCCCGGAGGAGAGGCAGGCGCATGGAG
CCCACCGCCAGGCGGCAGAGCAAGACGGCCGCCGGCGCGTCTCTTCTCGAGGACACGGCAAGCTCGCCGGCGTTCTTCAA
GTACACCAATGCCTCCGCTGAGGGCAATGGCTATGGCTATGGCGGCGTGGCCTCTCCGGTGATGGAGATGGGCAATGCGG
CCGACTTCTCCTGCGCCTTCTCCGCCACGACGGGCTTCGAGAGTCCCTTAAACGGGATTCCCCTGAGTGGCTACCTGCAA
ATGCAGTACTCCACTACACATGTCAAGGCGATTCCCGCAAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis