Browse Element(s) Details


OsAffx.2512.1.S1_x_at

Description tigr:9630.m00425
TID=OsAffx.2512.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g054301/11expressed protein
LOC_Os02g053501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05390Os.45173.1.S1_x_at5/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.46610.1.S1_x_at3/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390OsAffx.20877.1.S1_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05390Os.38764.1.S1_x_at1/112+2588319..2592400retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g05400Os.26890.1.A1_x_at4/112+2593931..2598268phosphatidate cytidylyltransferase family protein, putative, expressed
LOC_Os02g05410NANA2+2600398..2603981Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g05420OsAffx.25889.1.S1_at10/112+2607097..2611379expressed protein
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2512.1.S1_x_at--825--2151Chr02:2415553..2415577 (25 bp)
ACAGCTACGGCGCATACTCGTTCGA
NONE
OsAffx.2512.1.S1_x_at--165--8091Chr02:2415400..2415424 (25 bp)
GGACCTGTCCGCTTCCACCGTCGCA
NONE
OsAffx.2512.1.S1_x_at--428--4551Chr02:2415312..2415336 (25 bp)
GCGCCGTACGGCACGAACGTCGTGC
NONE
OsAffx.2512.1.S1_x_at--305--6991Chr02:2415307..2415331 (25 bp)
GTACGGCACGAACGTCGTGCACCTC
NONE
OsAffx.2512.1.S1_x_at--338--2691Chr02:2415258..2415282 (25 bp)
AAGCTGTACATGGTCGCGCGCCCGG
NONE
OsAffx.2512.1.S1_x_at--6--8111Chr02:2415233..2415257 (25 bp)
GGACCTGCAGCTGTCCTTGCTGCGT
NONE
OsAffx.2512.1.S1_x_at--216--6171Chr02:2415204..2415228 (25 bp)
GAGGAGGACATGATGAAATTTGCCA
NONE
OsAffx.2512.1.S1_x_at--682--8011Chr02:2415202..2415226 (25 bp)
GGAGGACATGATGAAATTTGCCATG
NONE
OsAffx.2512.1.S1_x_at--317--8973Chr02:2415191..2415215 (25 bp)
TGAAATTTGCCATGCTCACCGGCGT
NONE
OsAffx.2512.1.S1_x_at--830--4671Chr02:2415143..2415167 (25 bp)
GCGGGGAGCTCAGCATCGTCAAGCA
NONE
OsAffx.2512.1.S1_x_at--99--2231Chr02:2415119..2415143 (25 bp)
ACAAGTCGTGCCGTTACAGCTTCGG
NONE
Target Sequence 
ACAGCTACGGCGCATACTCGTTCGACACGGCGAGCGCCGCGTGGAGAAGGCCGGCGACTGGGCGCTGCCCTTCCGCGGCC
GCGCCGAGTACGTCCCCGAGCACGGCCTCTGGTTCGGCCTCTCCGCGGCGGACGACGGCGTGCTCGGCGCGTGGGACCTG
TCCGCTTCCACCGTCGCACAGCCGCAGCCGCCGCCGGCGGCGCAACCCGGGTGCGGGGTCTTCGAGGTGCCGGAGCCGGA
GGCGCCGTACGGCACGAACGTCGTGCACCTCGGCGGCGGCAAGCTGTGCGTCGCCAAGCTGTACATGGTCGCGCGCCCGG
GGACCTGCAGCTGTCCTTGCTGCGTCGGCGAGGAGGACATGATGAAATTTGCCATGCTCACCGGCGTCGAGGTGGCGCGC
GGCGGCCGTGGCGGGGAGCTCAGCATCGTCAAGCACAAGTCGTGCCGTTACAGCTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2512.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis