Browse Element(s) Details


OsAffx.25194.1.S1_at

Description tigr:9631.m02273
TID=OsAffx.25194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25194.1.S1_at--760--4431Chr03:13127723..13127747 (25 bp)
GCGCGTAAGCTTAACGGCCTCTTTA
LOC_Os03g22760
OsAffx.25194.1.S1_at--911--10471Chr03:13127733..13127757 (25 bp)
TTAACGGCCTCTTTAGCCGGCGATG
LOC_Os03g22760
OsAffx.25194.1.S1_at--630--9551Chr03:13127742..13127766 (25 bp)
TCTTTAGCCGGCGATGCAACAGCTC
LOC_Os03g22760
OsAffx.25194.1.S1_at--628--3991Chr03:13127786..13127810 (25 bp)
CGTGGAGCCGCAGCGCAGCTTGCAA
LOC_Os03g22760
OsAffx.25194.1.S1_at--398--4591Chr03:13127798..13127822 (25 bp)
GCGCAGCTTGCAAGAGAAGTCCGTC
LOC_Os03g22760
OsAffx.25194.1.S1_at--1113--4911Chr03:13127803..13127827 (25 bp)
GCTTGCAAGAGAAGTCCGTCGAGGT
LOC_Os03g22760
OsAffx.25194.1.S1_at--450--1531Chr03:13127832..13127856 (25 bp)
AGCAGTCATGGTGCCGCAGCGCGGC
LOC_Os03g22760
OsAffx.25194.1.S1_at--704--10691Chr03:13127857..13127881 (25 bp)
TTGCCAGAGAAGTCCGTTGCCGTTC
LOC_Os03g22760
OsAffx.25194.1.S1_at--426--7231Chr03:13127868..13127892 (25 bp)
GTCCGTTGCCGTTCTCAAGGGTAAG
LOC_Os03g22760
OsAffx.25194.1.S1_at--210--10631Chr03:13127873..13127897 (25 bp)
TTGCCGTTCTCAAGGGTAAGGGTTG
LOC_Os03g22760
OsAffx.25194.1.S1_at--875--7811Chr03:13127887..13127911 (25 bp)
GGTAAGGGTTGGATGTTCAAGAACT
LOC_Os03g22760
Target Sequence 
GCGCGTAAGCTTAACGGCCTCTTTAGCCGGCGATGCAACAGCTCCGGCGAGGTGACCAGCAGTCGTGGAGCCGCAGCGCA
GCTTGCAAGAGAAGTCCGTCGAGGTGACCAGCAGTCATGGTGCCGCAGCGCGGCTTGCCAGAGAAGTCCGTTGCCGTTCT
CAAGGGTAAGGGTTGGATGTTCAAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis