Browse Element(s) Details


OsAffx.2524.1.S1_at

Description gb:NM_195757.1
DB_XREF= gi:37532873
TID=OsAffx.2524.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0008A05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g183909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed
LOC_Os10g18410OsAffx.18289.1.S1_at10/1110+9030786..9031094hypothetical protein
LOC_Os10g18420OsAffx.30226.2.S1_x_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.2.S1_s_at11/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.442.1.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.4.S1_x_at3/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.30226.1.S1_x_at2/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18420OsAffx.24587.1.S1_x_at1/1110+9031725..9035527retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g18430OsAffx.18290.1.S1_at11/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18430OsAffx.10096.1.S1_x_at1/1110+9035836..9036807agmatine coumaroyltransferase, putative
LOC_Os10g18440OsAffx.20524.1.S1_at11/1110+9038319..9042196retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2524.1.S1_at--524--6511Chr10:9014881..9014905 (25 bp)
GATATCGGCATCGACTCAGCTTTGA
LOC_Os10g18390
OsAffx.2524.1.S1_at--1000--9651Chr10:9014896..9014920 (25 bp)
TCAGCTTTGACTTTATCATTCCGCC
LOC_Os10g18390
OsAffx.2524.1.S1_at--361--3199Chr11:11733898..11733987 (25 bp)
CAATATTCGCAGTATCCTCTTTCCC
NONE
OsAffx.2524.1.S1_at--780--10272Chr10:9016200..9016224 (25 bp)
TTTCCCCATACTATCCAACAGTTAG
LOC_Os10g18390
OsAffx.2524.1.S1_at--634--9211Chr10:9016213..9016237 (25 bp)
TCCAACAGTTAGGACAAGCTCCTCT
LOC_Os10g18390
OsAffx.2524.1.S1_at--901--9251Chr10:9016232..9016256 (25 bp)
TCCTCTTAGAGTGCAGTACCCTGGG
LOC_Os10g18390
OsAffx.2524.1.S1_at--943--2231NONE
AAATTAGTTTGCAATGTGGCGTACA
NONE
OsAffx.2524.1.S1_at--1109--771NONE
ATGTGGCGTACAAGGCCGTTGCTAT
NONE
OsAffx.2524.1.S1_at--1149--4691Chr10:9016990..9017014 (25 bp)
GCGGCTGCGGCAACTTTGTGACCCT
LOC_Os10g18390
OsAffx.2524.1.S1_at--726--10831Chr10:9017005..9017029 (25 bp)
TTGTGACCCTCCTGAATTCATCTTA
LOC_Os10g18390
OsAffx.2524.1.S1_at--559--9011Chr10:9017017..9017041 (25 bp)
TGAATTCATCTTACGCTGGTGGTTG
LOC_Os10g18390
Target Sequence 
GATATCGGCATCGACTCAGCTTTGACTTTATCATTCCGCCTCGCGCATCTTCGGCTTGATCACCCGTTCAAGCGCCCGGC
TACAACGACTTCTACAACCGATCGTCATCGAGCACGCGTCTACGTCATCAAGCTTTGGGTTGCCGCTGCGTCGCCCTCTC
GGGCTGCAGTGTCGCCGCCTGTGCCCCCTGAGGCTCAATACAATGTATCCAATATTCGCAGTATCCTCTTTCCCCATACT
ATCCAACAGTTAGGACAAGCTCCTCTTAGAGTGCAGTACCCTGGGTTGTATAAATTAGTTTGCAATGTGGCGTACAAGGC
CGTTGCTATGATGCAAAGGTGGAAGGAGTTACTAAAGGGGGGAGGTCGAGGGCAAGTAGATAACTGGAGAGACAAGATCT
TGGCAAACTTGGCGCGGCTGCGGCAACTTTGTGACCCTCCTGAATTCATCTTACGCTGGTGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis