Browse Element(s) Details


OsAffx.25403.1.S1_at

Description tigr:9631.m03612
TID=OsAffx.25403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3767011/11SRF-type transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37630OsAffx.25936.1.S1_s_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.1.S1_at8/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.7.S1_s_at7/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.2.S1_x_at4/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37630OsAffx.25936.5.S1_x_at3/113+20818718..20822402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g37640Os.11650.1.S1_at11/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640Os.37320.2.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37640OsAffx.25398.1.S1_x_at1/113+20822982..20830341MATE efflux family protein, expressed
LOC_Os03g37650OsAffx.30842.1.S1_at1/113+20836249..20841219retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g37670OsAffx.25403.1.S1_at11/113+20846134..20849684SRF-type transcription factor family protein
LOC_Os03g37680OsAffx.7616.1.S1_at1/113+20852148..20854259hypothetical protein
LOC_Os03g37690OsAffx.13217.2.S1_at11/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.10731.1.A1_a_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690OsAffx.13217.1.S1_at7/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37690Os.38764.1.S1_x_at1/113+20856013..20857497retrotransposon protein, putative, unclassified
LOC_Os03g37700OsAffx.13218.1.S1_at3/113+20861486..20863158retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37710OsAffx.13219.1.S1_at6/113+20863959..20865665hypothetical protein
LOC_Os03g37720NANA3+20868240..20872040NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25403.1.S1_at--852--2671Chr03:20849622..20849646 (25 bp)
AAGCGAGCTCTCGACGCTATATGGC
LOC_Os03g37670
OsAffx.25403.1.S1_at--548--4871Chr03:20849607..20849631 (25 bp)
GCTATATGGCGTGGATGCATGCGTT
LOC_Os03g37670
OsAffx.25403.1.S1_at--105--2951Chr03:20849569..20849593 (25 bp)
AAGGCGAGGCGCAACCTATGATGGT
LOC_Os03g37670
OsAffx.25403.1.S1_at--126--7491Chr03:20849546..20849570 (25 bp)
GTGTGGCCATCGGTACCAGAGGCAA
LOC_Os03g37670
OsAffx.25403.1.S1_at--243--5191Chr03:20849525..20849549 (25 bp)
GCAAGGCGTGTGATCGAGCGCTTCA
LOC_Os03g37670
OsAffx.25403.1.S1_at--226--5971Chr03:20849474..20849498 (25 bp)
GAGAACACGACTAACCTGGAGGGCT
LOC_Os03g37670
OsAffx.25403.1.S1_at--696--8631Chr03:20849329..20849353 (25 bp)
TGGGCCTCACGGTCAAGCAGATTAC
LOC_Os03g37670
OsAffx.25403.1.S1_at--390--1511Chr03:20849314..20849338 (25 bp)
AGCAGATTACTAGCCTCAACTCGAT
LOC_Os03g37670
OsAffx.25403.1.S1_at--284--2551Chr03:20849297..20849321 (25 bp)
AACTCGATGGTAGAGGAACGCCTCA
LOC_Os03g37670
OsAffx.25403.1.S1_at--1076--5391Chr03:20849271..20849295 (25 bp)
GAAGCTCCGTGGGAATGGTCTCCTG
LOC_Os03g37670
OsAffx.25403.1.S1_at--776--1691Chr03:20849241..20849265 (25 bp)
ACCAGTCCCAACCAGTAATCAAGAT
LOC_Os03g37670
Target Sequence 
AAGCGAGCTCTCGACGCTATATGGCGTGGATGCATGCGTTGTGATGTATGCTGAAGGCGAGGCGCAACCTATGATGGTGT
GGCCATCGGTACCAGAGGCAAGGCGTGTGATCGAGCGCTTCAGGGCCTTGCCGCAGAAGGACCAATACGAGAACACGACT
AACCTGGAGGGCTTCCTCAAGCAGCGCATCGCCAATCTCCAAGAGAAGGTGGATAAGGCAAAGCATGAGAACGATGAGCT
CGAGACAAAGCTCCTCCTCCTCAACAGCCTTGACTGCTGCCTCCCTAGCCTTGTGGGCCTCACGGTCAAGCAGATTACTA
GCCTCAACTCGATGGTAGAGGAACGCCTCAAGAAGCTCCGTGGGAATGGTCTCCTGGCGACACCAGTCCCAACCAGTAAT
CAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis