Browse Element(s) Details


OsAffx.25417.1.S1_s_at

Description tigr:9631.m03692
TID=OsAffx.25417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38450OsAffx.25414.1.S1_at10/113+21299455..21301500hypothetical protein
LOC_Os03g38450OsAffx.17052.2.S1_at1/113+21299455..21301500hypothetical protein
LOC_Os03g38470OsAffx.25415.1.S1_at11/113+21308148..21311443GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g38480OsAffx.3434.1.S1_at10/113+21312644..21316708hypothetical protein
LOC_Os03g38480Os.31503.2.S1_at1/113+21312644..21316708hypothetical protein
LOC_Os03g38490Os.20798.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38490OsAffx.25416.1.S1_at11/113+21318878..21323546DAG protein, chloroplast precursor, putative, expressed
LOC_Os03g38500OsAffx.25417.1.S1_s_at11/113+21325810..21330434expressed protein
LOC_Os03g38500Os.16101.1.S1_at2/113+21325810..21330434expressed protein
LOC_Os03g38510NANA3+21331133..21332016hypothetical protein
LOC_Os03g38520NANA3+21332814..21335171expressed protein
LOC_Os03g38530OsAffx.13097.1.S1_s_at11/113+21339813..21344454transposon protein, putative, Mutator sub-class
LOC_Os03g38534NANA3+21346727..21347610hypothetical protein
LOC_Os03g38540Os.34624.2.S1_s_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38540Os.34624.1.S1_at11/113+21347527..21349523formiminotransferase-cyclodeaminase, putative, expressed
LOC_Os03g38550NANA3+21350711..21351070retrotransposon protein, putative, unclassified
LOC_Os03g38560Os.28943.1.S1_x_at1/113+21352197..21355235retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25417.1.S1_s_at--1048--6131Chr03:21326439..21326463 (25 bp)
GAGGGTTAACAAACTGCCAGCCAAT
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--532--4411Chr03:21326454..21326478 (25 bp)
GCCAGCCAATAGTTCCTATGCCATA
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--1064--3691Chr03:21326469..21326493 (25 bp)
CTATGCCATACACCGCTTGAAGGTT
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--785--1551Chr03:21326501..21326525 (25 bp)
AGCTTCGCCATCTATTATCTATCAA
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--397--10751Chr03:21329845..21329869 (25 bp)
TTGAACTTCTTTTTGCAAGCCTTTC
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--654--2031Chr03:21329887..21329911 (25 bp)
ACTATCCTGTATCCTCCATATGTTA
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--1029--2071Chr03:21329911..21330107 (25 bp)
ACATATGGTAGCTGGGTGCTCCGTT
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--89--10251Chr03:21330107..21330131 (25 bp)
TTTGGCATTTCTGCTGTCCGTCGAA
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--653--8711Chr03:21330121..21330145 (25 bp)
TGTCCGTCGAACATGTTTCCAGTAC
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--200--8151Chr03:21330163..21330187 (25 bp)
GGAAATCACCCTTCTATTTTGTAGA
LOC_Os03g38500
OsAffx.25417.1.S1_s_at--782--8031Chr03:21330224..21330248 (25 bp)
GGAGTATATGATCTTCCGTACGCAA
LOC_Os03g38500
Target Sequence 
GAGGGTTAACAAACTGCCAGCCAATAGTTCCTATGCCATACACCGCTTGAAGGTTCTAAACAAGCTTCGCCATCTATTAT
CTATCAAGAGAACAACATCTCAAGATGAGGAGCTTGAACTTCTTTTTGCAAGCCTTTCAATTTAAACACTATCGGACTAT
CCTGTATCCTCCATATGTTACATATGGTAGCTGGGTGCTCCGTTTTGGCATTTCTGCTGTCCGTCGAACATGTTTCCAGT
ACGGTTTTCTGAAGTTATTGGAAATCACCCTTCTATTTTGTAGAACTTTATGAGTGGATGGTGTTGAAACTATGATGTAT
GGAGTATATGATCTTCCGTACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25417.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis