Browse Element(s) Details


OsAffx.25490.1.S1_at

Description tigr:9631.m04082
TID=OsAffx.25490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative auxin response factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4241011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42370OsAffx.13305.1.S1_at11/113+23521838..23531538B3 DNA binding domain containing protein
LOC_Os03g42380Os.7388.1.S1_s_at11/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_x_at9/113+23536662..23542339expressed protein
LOC_Os03g42380Os.7388.2.S1_at9/113+23536662..23542339expressed protein
LOC_Os03g42400OsAffx.13307.1.S1_at11/113+23546428..23546879hypothetical protein
LOC_Os03g42410OsAffx.25490.1.S1_at11/113+23549703..23551723B3 DNA binding domain containing protein
LOC_Os03g42420Os.51715.1.S1_at10/113+23564065..23566177B3 DNA binding domain containing protein, expressed
LOC_Os03g42430Os.55723.1.S1_at11/113+23568249..23570669B3 DNA binding domain containing protein, expressed
LOC_Os03g42440NANA3+23574137..23574521hypothetical protein
LOC_Os03g42450OsAffx.25491.1.S1_at11/113+23575121..23575597expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25490.1.S1_at--1032--7491Chr03:23550673..23550697 (25 bp)
GTGGTGACTCTCAACTGAAGACTCT
LOC_Os03g42410
OsAffx.25490.1.S1_at--1055--5651Chr03:23550744..23550768 (25 bp)
GACATGTCAGGCAGATCTTACGATA
LOC_Os03g42410
OsAffx.25490.1.S1_at--15--2671Chr03:23550968..23550992 (25 bp)
AAGCGGAACTTGTACCGGGTTGCAT
LOC_Os03g42410
OsAffx.25490.1.S1_at--1072--5791Chr03:23551005..23551029 (25 bp)
GACCGATCTTACTCGTTTGCAGAAG
LOC_Os03g42410
OsAffx.25490.1.S1_at--598--10491Chr03:23551058..23551082 (25 bp)
TTAATTCTGAAACCCCAATCTATGG
LOC_Os03g42410
OsAffx.25490.1.S1_at--995--10531Chr03:23551106..23551129 (24 bp)
TTCATGGGATTCCTTGTACCGTGGA
LOC_Os03g42410
OsAffx.25490.1.S1_at--89--10151Chr03:23551493..23551517 (25 bp)
TATGCCGATGTATATCTCCCATTTG
LOC_Os03g42410
OsAffx.25490.1.S1_at--386--8171Chr03:23551523..23551547 (25 bp)
GGAACAGTCGTGCTTCAACATCATG
LOC_Os03g42410
OsAffx.25490.1.S1_at--110--8211Chr03:23551557..23551581 (25 bp)
GGAATGTGCGGTGTTGTCTTACTAA
LOC_Os03g42410
OsAffx.25490.1.S1_at--1148--2451Chr03:23551631..23551655 (25 bp)
AACAAGCTGCACCTGGGAGATATCT
LOC_Os03g42410
OsAffx.25490.1.S1_at--681--9171Chr03:23551655..23551679 (25 bp)
TGCCTCTTCGACCTACTGAAAGACA
LOC_Os03g42410
Target Sequence 
GTGGTGACTCTCAACTGAAGACTCTAATCTTTGATTCGAGTGGTTGCGAGAAAGTATGTGAAAAACCTGTTGACATGTCA
GGCAGATCTTACGATATTGCCATGAGAAACTCACAAGATGAAAAGAAGAAACGGAAGCAAAGGGATATCTCAAGGCAGGG
GACAGTGAAGCCATCAGAAGAAGGTCTGAAAGCGGAACTTGTACCGGGTTGCATCCTCCCATCCCGGACCGATCTTACTC
GTTTGCAGAAGAATATACTGATAGAGAAGGTGAAAGCTATTAATTCTGAAACCCCAATCTATGGGTATGTCATGAACAAT
AGCAGTATTCATGGGATTCCTTGTACCGTGGAAATTTCTAAGAAATATGCCGATGTATATCTCCCATTTGAGGATGGAAC
AGTCGTGCTTCAACATCATGGCAAGAGTTGGAATGTGCGGTGTTGTCTTACTAAGCAAAACTCGAAAAGGTTTTTGAAAG
GGTGGAGACAGTTTGCAGGTGACAACAAGCTGCACCTGGGAGATATCTGCCTCTTCGACCTACTGAAAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis