Browse Element(s) Details


OsAffx.25577.1.S1_at

Description tigr:9631.m04514
TID=OsAffx.25577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal protein S21e, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4649011/1140S ribosomal protein S21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46460Os.16517.1.S1_at11/113+26232282..26236343membrane associated salt-inducible protein, putative, expressed
LOC_Os03g46470Os.19632.1.S1_at11/113+26235422..26241186ZIP zinc/iron transport family protein, expressed
LOC_Os03g46480Os.26875.1.S1_at9/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46480OsAffx.5832.1.S1_at1/113+26242375..26247663RanBP1 domain containing protein, expressed
LOC_Os03g46490OsAffx.25577.1.S1_at11/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46490Os.57468.1.S1_x_at1/113+26257756..2625889240S ribosomal protein S21, putative, expressed
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25577.1.S1_at--25--1311Chr03:26257871..26257962 (25 bp)
AGAGGAAGGCTGAGCTACTTGATAC
LOC_Os03g46490
OsAffx.25577.1.S1_at--739--6191Chr03:26257870..26257961 (25 bp)
GAGGAAGGCTGAGCTACTTGATACA
LOC_Os03g46490
OsAffx.25577.1.S1_at--867--931Chr03:26257869..26257960 (25 bp)
AGGAAGGCTGAGCTACTTGATACAA
LOC_Os03g46490
OsAffx.25577.1.S1_at--345--8211Chr03:26257868..26257959 (25 bp)
GGAAGGCTGAGCTACTTGATACAAT
LOC_Os03g46490
OsAffx.25577.1.S1_at--910--5291Chr03:26257867..26257958 (25 bp)
GAAGGCTGAGCTACTTGATACAATG
LOC_Os03g46490
OsAffx.25577.1.S1_at--1087--2931Chr03:26257866..26257957 (25 bp)
AAGGCTGAGCTACTTGATACAATGC
LOC_Os03g46490
OsAffx.25577.1.S1_at--757--911Chr03:26257865..26257956 (25 bp)
AGGCTGAGCTACTTGATACAATGCC
LOC_Os03g46490
OsAffx.25577.1.S1_at--995--8331Chr03:26257864..26257955 (25 bp)
GGCTGAGCTACTTGATACAATGCCT
LOC_Os03g46490
OsAffx.25577.1.S1_at--691--4751Chr03:26257863..26257883 (21 bp)
GCTGAGCTACTTGATACAATGCCTG
LOC_Os03g46490
OsAffx.25577.1.S1_at--1156--3851Chr03:26257862..26257883 (22 bp)
CTGAGCTACTTGATACAATGCCTGT
LOC_Os03g46490
OsAffx.25577.1.S1_at--754--8911Chr03:26257861..26257883 (23 bp)
TGAGCTACTTGATACAATGCCTGTT
LOC_Os03g46490
Target Sequence 
AGAGGAAGGCTGAGCTACTTGATACAATGCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis