Browse Element(s) Details


OsAffx.25625.1.S1_at

Description tigr:9631.m04728
TID=OsAffx.25625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4858011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48560OsAffx.13408.1.S1_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560OsAffx.13408.1.S1_x_at10/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48560Os.46676.1.A1_x_at1/113+27627635..27630911BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os03g48570OsAffx.13409.1.S1_at11/113+27640988..27642323hypothetical protein
LOC_Os03g48580OsAffx.25625.1.S1_at11/113+27650540..27651675hypothetical protein
LOC_Os03g48590OsAffx.13410.1.S1_x_at11/113+27652296..27653808preprotein translocase, SecY subunit containing protein
LOC_Os03g48600Os.48278.2.S1_x_at10/113+27654519..27659664auxin-regulated protein, putative, expressed
LOC_Os03g48610OsAffx.13411.1.S1_at11/113+27664651..27669349galactosyltransferase family protein, putative, expressed
LOC_Os03g48626Os.57328.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.37537.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_a_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.1.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_s_at11/113+27672927..27678227expressed protein
LOC_Os03g48626Os.8439.2.S1_at11/113+27672927..27678227expressed protein
LOC_Os03g48626OsAffx.3554.1.S1_at9/113+27672927..27678227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25625.1.S1_at--61--3031Chr03:27650581..27650605 (25 bp)
AATCGAGCCCCTAAAGCGGCAACTT
LOC_Os03g48580
OsAffx.25625.1.S1_at--363--4071Chr03:27650584..27650608 (25 bp)
CGAGCCCCTAAAGCGGCAACTTGAT
LOC_Os03g48580
OsAffx.25625.1.S1_at--720--4171Chr03:27650589..27650613 (25 bp)
CCCTAAAGCGGCAACTTGATGGTGG
LOC_Os03g48580
OsAffx.25625.1.S1_at--971--6851Chr03:27650620..27650644 (25 bp)
GTTTGTCTGCGGCAGGGAGCAGGGA
LOC_Os03g48580
OsAffx.25625.1.S1_at--257--8051Chr03:27651509..27651529 (21 bp)
GGAGAGGTTGGTGCCGGCGCGGTGC
LOC_Os03g48580
OsAffx.25625.1.S1_at--561--4671Chr03:27651523..27651547 (25 bp)
GCGGTGCCCCGACCTGGACAACCAG
LOC_Os03g48580
OsAffx.25625.1.S1_at--295--1511Chr03:27651546..27651570 (25 bp)
AGCACCTGCTACTGCGCGGCATGGA
LOC_Os03g48580
OsAffx.25625.1.S1_at--971--891Chr03:27651604..27651628 (25 bp)
AGGCGCATGCAGGACCGGCTCAACA
LOC_Os03g48580
OsAffx.25625.1.S1_at--421--651Chr03:27651610..27651634 (25 bp)
ATGCAGGACCGGCTCAACATGGACG
LOC_Os03g48580
OsAffx.25625.1.S1_at--590--951Chr03:27651614..27651638 (25 bp)
AGGACCGGCTCAACATGGACGGTGA
LOC_Os03g48580
OsAffx.25625.1.S1_at--1103--4251Chr03:27651618..27651642 (25 bp)
CCGGCTCAACATGGACGGTGACGGA
LOC_Os03g48580
Target Sequence 
AATCGAGCCCCTAAAGCGGCAACTTGATGGTGGTGGGGGGTTTGTCTGCGGCAGGGAGCAGGGAGTGGGAGAGGTTGGTG
CCGGCGCGGTGCCCCGACCTGGACAACCAGCACCTGCTACTGCGCGGCATGGAGAAGAGCAAAGAGGGGAAGCTGAGCGA
AGGCGCAGGCGCATGCAGGACCGGCTCAACATGGACGGTGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis