Browse Element(s) Details


OsAffx.25697.1.S1_at

Description tigr:9631.m05217
TID=OsAffx.25697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative Sec63 domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5322011/11U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein
LOC_Os03g53190Os.4749.1.S1_at11/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53190Os.40159.1.A1_x_at1/113+30464280..30467082Histone H2A.Z, putative, expressed
LOC_Os03g53200Os.34925.1.A1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_s_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53200Os.27808.1.S1_at11/113+30467981..30470072Calmodulin, putative, expressed
LOC_Os03g53210Os.4846.1.S1_at1/113+30470198..30470838expressed protein
LOC_Os03g53220OsAffx.25697.1.S1_at11/113+30473483..30481508U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
LOC_Os03g53230Os.12747.1.S1_at11/113+30482460..30485708Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthethase, putative, expressed
LOC_Os03g53240Os.54949.1.S1_at11/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_at9/113+30494313..30495324hypothetical protein
LOC_Os03g53240OsAffx.23598.1.S1_x_at8/113+30494313..30495324hypothetical protein
LOC_Os03g53250Os.11644.1.S1_at11/113+30499239..30504143Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0007131biological_processmeiotic recombination
GO:0051026biological_processchiasma formation
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25697.1.S1_at--696--791Chr03:30480951..30480975 (25 bp)
ATGTGGGATCGCGATTCCGTGCTGC
LOC_Os03g53220
OsAffx.25697.1.S1_at--539--10671Chr03:30480982..30481006 (25 bp)
TTCCACACTTCACCGAGGAGTTAGC
LOC_Os03g53220
OsAffx.25697.1.S1_at--594--6771Chr03:30481001..30481025 (25 bp)
GTTAGCCCGGAGATGCCAGGAGAAC
LOC_Os03g53220
OsAffx.25697.1.S1_at--898--4071Chr03:30481040..30481064 (25 bp)
CGAGACCATCTTCGATCTGGCTGAG
LOC_Os03g53220
OsAffx.25697.1.S1_at--840--7891Chr03:30481141..30481165 (25 bp)
GGTTCCCAAACATCGACATGGCTTT
LOC_Os03g53220
OsAffx.25697.1.S1_at--907--3451Chr03:30481190..30481214 (25 bp)
CAGTGTGACCGTGCAGGTGACGCTA
LOC_Os03g53220
OsAffx.25697.1.S1_at--597--6231Chr03:30481223..30481247 (25 bp)
GATGGCAGACCTGCTGCAATCTGAG
LOC_Os03g53220
OsAffx.25697.1.S1_at--530--9011Chr03:30481237..30481261 (25 bp)
TGCAATCTGAGGCTGGTCCAGTCCA
LOC_Os03g53220
OsAffx.25697.1.S1_at--296--8351Chr03:30481300..30481324 (25 bp)
GGCTGGTGATTGGTGATCGCTCCAC
LOC_Os03g53220
OsAffx.25697.1.S1_at--289--6111Chr03:30481372..30481396 (25 bp)
GAGTGAAGCTCGAGTTCGCTGCCCC
LOC_Os03g53220
OsAffx.25697.1.S1_at--893--10771Chr03:30481431..30481455 (25 bp)
TTGATGTCTGATTCCTATCTGGGCT
LOC_Os03g53220
Target Sequence 
ATGTGGGATCGCGATTCCGTGCTGCTTCAGCTTCCACACTTCACCGAGGAGTTAGCCCGGAGATGCCAGGAGAACGAAGG
CAAGGCCATCGAGACCATCTTCGATCTGGCTGAGATGAGCACGCATGAGATGCAGGATCTGCTGCAGCTACCAAGCTCCC
AGCTGCAGGACATCGTCGGATTCCTCAGGCGGTTCCCAAACATCGACATGGCTTTCCAAGTTCTTGAAGGCGATGGTGGC
AGTGTGACCGTGCAGGTGACGCTAGAGCGCGAGATGGCAGACCTGCTGCAATCTGAGGCTGGTCCAGTCCATGCCCCCAG
GTTCCCAAAGCCCAAGGAAGAAGGATGGTGGCTGGTGATTGGTGATCGCTCCACCGACCAGTTGCTGGCAATCAAGAGGG
TCAAGCTCCAGAAGAGGGCTCGAGTGAAGCTCGAGTTCGCTGCCCCTGCAGAAGCAGGGAGAAAAGATTACATGGTTTAC
TTGATGTCTGATTCCTATCTGGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis