Browse Element(s) Details


OsAffx.2570.1.S1_at

Description tigr:9630.m01010
TID=OsAffx.2570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1087011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10870OsAffx.2570.1.S1_at11/112+5768300..5768731hypothetical protein
LOC_Os02g10880OsAffx.26224.2.S1_at1/112+5775949..5777385Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os02g10890OsAffx.11983.1.S1_at11/112+5779673..5779987hypothetical protein
LOC_Os02g10900OsAffx.24191.1.S1_at11/112+5785295..5788769NB-ARC domain containing protein, expressed
LOC_Os02g10910Os.35344.3.S1_x_at9/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910Os.35344.18.S1_x_at7/112+5790143..5796042transposon protein, putative, Mutator sub-class
LOC_Os02g10910OsAffx.22940.5.S1_x_at1/112+5790143..5796042transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2570.1.S1_at--1085--7111Chr02:5768350..5768374 (25 bp)
GTCAGTGATAGCTGCGAGAGGCCAA
LOC_Os02g10870
OsAffx.2570.1.S1_at--701--291Chr02:5768357..5768381 (25 bp)
ATAGCTGCGAGAGGCCAACACGGTT
LOC_Os02g10870
OsAffx.2570.1.S1_at--462--4231Chr02:5768423..5768447 (25 bp)
CCGACCGACAGCGTGGGAGGTCAAC
LOC_Os02g10870
OsAffx.2570.1.S1_at--727--271Chr02:5768511..5768535 (25 bp)
ATAGGCATGCGGAGGTTGGCCAGCA
LOC_Os02g10870
OsAffx.2570.1.S1_at--437--7571Chr02:5768539..5768563 (25 bp)
GGGTCGGTTCAATAGTGTCCACGCA
LOC_Os02g10870
OsAffx.2570.1.S1_at--854--7451Chr02:5768553..5768577 (25 bp)
GTGTCCACGCACTATCGAAGGATGA
LOC_Os02g10870
OsAffx.2570.1.S1_at--667--3351Chr02:5768558..5768582 (25 bp)
CACGCACTATCGAAGGATGACGGGT
LOC_Os02g10870
OsAffx.2570.1.S1_at--1051--4051Chr02:5768590..5768614 (25 bp)
CGATGGAGTGATAGCTTCGGATGAC
LOC_Os02g10870
OsAffx.2570.1.S1_at--770--1771Chr02:5768657..5768681 (25 bp)
ACCGTCAACGACGACATTCCGAGTG
LOC_Os02g10870
OsAffx.2570.1.S1_at--438--5671Chr02:5768669..5768693 (25 bp)
GACATTCCGAGTGTCGTTCTCCGGC
LOC_Os02g10870
OsAffx.2570.1.S1_at--860--4051Chr02:5768676..5768700 (25 bp)
CGAGTGTCGTTCTCCGGCCTTCTGG
LOC_Os02g10870
Target Sequence 
GTCAGTGATAGCTGCGAGAGGCCAACACGGTTGGTGCCTAGAGGTTGGTGTGGGCGACGGAAGGGATGTCGGCCCGACCG
ACAGCGTGGGAGGTCAACGCGGCGACGGCAGGGAGGCTAGCGTCGTGGCAGCAGGGAAGCCGGTGATGGTGGGTATGGAA
CATAGGCATGCGGAGGTTGGCCAGCAGGGGGGTCGGTTCAATAGTGTCCACGCACTATCGAAGGATGACGGGTGGTGGAG
CGATGGAGTGATAGCTTCGGATGACAGGGGATGGGCAGTAGGTGAAAACCTAGCCCGGCCTTGCTGGACCGTCAACGACG
ACATTCCGAGTGTCGTTCTCCGGCCTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis