Browse Element(s) Details


OsAffx.25746.1.S1_x_at

Description tigr:9631.m05671
TID=OsAffx.25746.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative vesicle trafficking protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5776011/1125.3 kDa vesicle transport protein, putative, expressed
LOC_Os06g098502/1125.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g215801/1125.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g133501/1125.3 kDa vesicle transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57690Os.15575.1.S1_at11/113+32818329..32825391Aldehyde oxidase 1, putative, expressed
LOC_Os03g57720Os.15575.1.S1_at3/113+32836339..32837447aldehyde oxidase-2, putative, expressed
LOC_Os03g57730OsAffx.3634.1.S1_at11/113+32841829..32842334Plastocyanin-like domain containing protein
LOC_Os03g57740OsAffx.13533.1.S1_at11/113+32846035..32846671Plastocyanin-like domain containing protein
LOC_Os03g57750OsAffx.3635.1.S1_s_at11/113+32848914..32849682expressed protein
LOC_Os03g57760OsAffx.25746.1.S1_x_at11/113+32850137..3285409225.3 kDa vesicle transport protein, putative, expressed
LOC_Os03g57770OsAffx.25747.1.S1_at11/113+32858482..32859169expressed protein
LOC_Os03g57780Os.8586.1.S1_at11/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57780OsAffx.5056.1.S1_x_at1/113+32864621..32869594leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25746.1.S1_x_at--272--532Chr06:5011862..5012306 (25 bp)
ATCGCCAGGCCTTGATTCGGAAGTA
LOC_Os06g09850
OsAffx.25746.1.S1_x_at--1031--4032Chr06:5011831..5011854 (24 bp)
CGTTGCCATTGTGATCGGTGTAGTT
LOC_Os06g09850
OsAffx.25746.1.S1_x_at--816--8651Chr03:32850482..32850506 (25 bp)
TGGGCCTGCGTTACAACACTGGAGA
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--116--291Chr03:32850422..32850446 (25 bp)
ATAGTGCTTTGGTGACGTGTATCCC
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--198--10133Chr08:12844430..12844450 (21 bp)
TATCTGCCCATTCAAGCGAGTACTT
LOC_Os08g21580
OsAffx.25746.1.S1_x_at--1024--1611Chr03:32850382..32850406 (25 bp)
AGCGAGTACTTCAGCTGCCCTTTTA
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--632--9231Chr03:32850354..32850378 (25 bp)
TCCTCCTCACTACAAAGCTATTCAA
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--617--7071Chr03:32850329..32850353 (25 bp)
GTCAATTCGTTGTAGCATAGGCCTT
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--469--8431Chr03:32850310..32850334 (25 bp)
GGCCTTATGACGGACTTGATTTTGT
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--743--9631Chr03:32850188..32850212 (25 bp)
TCAGGCTGAATATCGTATACTCCAT
LOC_Os03g57760
OsAffx.25746.1.S1_x_at--1113--1971Chr03:32850170..32850194 (25 bp)
ACTCCATATCTCTTGGACTTCATGC
LOC_Os03g57760
Target Sequence 
ATCGCCAGGCCTTGATTCGGAAGTATGCCCCCGTTGCCATTGTGATCGGTGTAGTTTTGATGCTCTTTTGGTTGAAGAAC
AAGATATGGTAACTGCACCAAATGAAGGAAGCTGGGCCTGCGTTACAACACTGGAGAAAGAAAAACAAAAAAATTAGGTT
GATTCTGGATCAATAGTGCTTTGGTGACGTGTATCCCGTATCTGCCCATTCAAGCGAGTACTTCAGCTGCCCTTTTACCC
TCCTCCTCACTACAAAGCTATTCAAGTCAATTCGTTGTAGCATAGGCCTTATGACGGACTTGATTTTGTAAATCCTTGGA
ACTGTACATATAAGAGCTCTGTAGAGTTGAGTTTTCGGTATTGGGATGGGATTGTATTCTTTTGCAAACTCAACTCATGT
AAGAATTCAGGCTGAATATCGTATACTCCATATCTCTTGGACTTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25746.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis