Browse Element(s) Details


OsAffx.25798.1.S1_at

Description tigr:9631.m06201
TID=OsAffx.25798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative inner membrane protein (with alternative splicing)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6275011/11ARTEMIS protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0010020biological_processchloroplast fission
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25798.1.S1_at--923--931Chr03:35455325..35455349 (25 bp)
AGGCACACAAGCTGGCATCGTCGAT
LOC_Os03g62750
OsAffx.25798.1.S1_at--1139--5631Chr03:35455731..35455755 (25 bp)
GACAGCCATTCTTCAGTTATCGACC
LOC_Os03g62750
OsAffx.25798.1.S1_at--647--6791Chr03:35455746..35455770 (25 bp)
GTTATCGACCCTACGTCACATGACG
LOC_Os03g62750
OsAffx.25798.1.S1_at--827--7811Chr03:35455869..35455893 (25 bp)
GGTCTAGCCTTATCTGCTGCTATAA
LOC_Os03g62750
OsAffx.25798.1.S1_at--37--8031Chr03:35455903..35455927 (25 bp)
GGAGGATCACCAATTCATGCCTATC
LOC_Os03g62750
OsAffx.25798.1.S1_at--889--9071Chr03:35455931..35455955 (25 bp)
TGCTTCAGCATGTTCACCCAAGGAT
LOC_Os03g62750
OsAffx.25798.1.S1_at--177--5851Chr03:35455964..35455988 (25 bp)
GACCATACGTGCTAGTTGCGAGCTT
LOC_Os03g62750
OsAffx.25798.1.S1_at--695--6671Chr03:35455978..35456002 (25 bp)
GTTGCGAGCTTCAGACAGACAGGAT
LOC_Os03g62750
OsAffx.25798.1.S1_at--768--2151Chr03:35456003..35456027 (25 bp)
ACAGCTACAGGAGTCGATTCTTACA
LOC_Os03g62750
OsAffx.25798.1.S1_at--531--6931Chr03:35456036..35456060 (25 bp)
GTAGGCGGCATAATCTTTTTGAAAC
LOC_Os03g62750
OsAffx.25798.1.S1_at--180--3611Chr03:35456071..35456095 (25 bp)
CATTGTGCTTTTTCTGCCTTTAGGA
LOC_Os03g62750
Target Sequence 
AGGCACACAAGCTGGCATCGTCGATGGAAAACAGAATTCAGATGCATCTGGAGACAACATAGATGAACAGGAATCTCATG
AAAATGAACCAATTATAGCTAACGGCAATGGTGGACTTAGCCATAGTACAAATGAAATGATACCAAATGGAAGCATGAAA
GAGGATATAATTCAGGAATCAACTGACAGCCATTCTTCAGTTATCGACCCTACGTCACATGACGCTCATAAATCGAGGGA
CGAAGAGAACGAACAAGATGCAGTGTAGAGAATGGACGAATGGACAAATCTGCAGTGTAGTAAATGGAAACTGGTGGTGG
TGGGTCTAGCCTTATCTGCTGCTATAATGTGCCTATGGAGGATCACCAATTCATGCCTATCTGCTGCTTCAGCATGTTCA
CCCAAGGATAGGCAATTGACCATACGTGCTAGTTGCGAGCTTCAGACAGACAGGATACAGCTACAGGAGTCGATTCTTAC
AAGAAGATAGTAGGCGGCATAATCTTTTTGAAACAATGCCCTAGCATTGTGCTTTTTCTGCCTTTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis