Browse Element(s) Details


OsAffx.25825.1.S1_at

Description tigr:9632.m00085
TID=OsAffx.25825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to sesquiterpene synthase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0181011/11Terpene synthase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01830NANA4+519882..520543hypothetical protein
LOC_Os04g01840OsAffx.25936.2.S1_x_at2/114+522420..524829transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01850OsAffx.25936.1.S1_s_at10/114+527905..528397hypothetical protein
LOC_Os04g01850OsAffx.25936.7.S1_s_at9/114+527905..528397hypothetical protein
LOC_Os04g01860Os.52257.1.S1_at3/114+532305..532958lectin protein kinase family protein, putative
LOC_Os04g01874Os.52257.1.S1_at11/114+536282..544079Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25825.1.S1_at--301--10111Chr04:512724..512748 (25 bp)
TATGGCACCTTGGAAGAGCTTCACC
LOC_Os04g01810
OsAffx.25825.1.S1_at--897--5911Chr04:512739..512763 (25 bp)
GAGCTTCACCTGTTCAACAATGCTG
LOC_Os04g01810
OsAffx.25825.1.S1_at--939--10111Chr04:513172..513196 (25 bp)
TATGTGATGTCCCTTCTTTCCAAGA
LOC_Os04g01810
OsAffx.25825.1.S1_at--1125--7751Chr04:513220..513244 (25 bp)
GGTGCTTCACCATTGGGAATTGACT
LOC_Os04g01810
OsAffx.25825.1.S1_at--232--7731Chr04:514770..514794 (25 bp)
GGTGGAGTCCCAACTGCGGTAGAAT
LOC_Os04g01810
OsAffx.25825.1.S1_at--992--7731Chr04:514812..514836 (25 bp)
GGTGTGACAGTCCAAGAAGCCAAGA
LOC_Os04g01810
OsAffx.25825.1.S1_at--528--9731Chr04:514876..514900 (25 bp)
TCAATCAAGAGTTCCTGCGCAACAC
LOC_Os04g01810
OsAffx.25825.1.S1_at--528--7471Chr04:514927..514951 (25 bp)
GTGTGATAAACCTTGCACGGCTCAT
LOC_Os04g01810
OsAffx.25825.1.S1_at--171--1911Chr04:514943..514967 (25 bp)
ACGGCTCATGGAAACCCTTTACAAG
LOC_Os04g01810
OsAffx.25825.1.S1_at--902--851Chr04:514975..514999 (25 bp)
ATGGCTACACACACTGCTCGGGAGT
LOC_Os04g01810
OsAffx.25825.1.S1_at--948--9091Chr04:514989..515013 (25 bp)
TGCTCGGGAGTTACTGACCTCATTT
LOC_Os04g01810
Target Sequence 
TATGGCACCTTGGAAGAGCTTCACCTGTTCAACAATGCTGTCCAAAGCTGGGATGAAGGAGGAGCAAAACAGATTGGTGA
TTACTTCGGGTATGTGATGTCCCTTCTTTCCAAGACACTCAACGAATTTGTGGTTGATGGTGCTTCACCATTGGGAATTG
ACTGTACCAAGAAGACGATCAAGGAGGCAAGCAGATGCATGTTGCAAGAGATCATATGGAGAGAAGAGGGACAGTGGGAG
AAAGACGGAGGTGGAGTCCCAACTGCGGTAGAATGCTACATGAAAGAGTATGGTGTGACAGTCCAAGAAGCCAAGAAAGC
ACTATGGTGCCTTGTAGAGGAGCAGTGGAGAAGCATCAATCAAGAGTTCCTGCGCAACACGACGGTCCCAGTCCCCCTGT
TGACACGTGTGATAAACCTTGCACGGCTCATGGAAACCCTTTACAAGACGACCAATGGCTACACACACTGCTCGGGAGTT
ACTGACCTCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis