Browse Element(s) Details


OsAffx.25860.3.S1_at

Description tigr:9630.m03010
TID=OsAffx.25860.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3185011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31320OsAffx.8589.1.S1_at1/112+18783935..18786919transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31330Os.39476.1.S1_at3/112+18788106..18789189transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g31830OsAffx.2820.1.S1_at11/112+18791230..18797143hypothetical protein
LOC_Os02g31840Os.8855.1.S1_at11/112+18799627..18800720expressed protein
LOC_Os02g31850OsAffx.25860.3.S1_at11/112+18807205..18810136transposon protein, putative, unclassified
LOC_Os02g31860Os.14382.1.S1_at8/112+18812264..18815504expressed protein
LOC_Os02g31867Os.15317.1.A1_at11/112+18818690..18820281expressed protein
LOC_Os02g31874Os.11825.1.S1_at11/112+18821158..18825876expressed protein
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25860.3.S1_at--659--1511Chr02:18809539..18809563 (25 bp)
AGCAGCGTCGAGAACTTATCGCAAC
LOC_Os02g31850
OsAffx.25860.3.S1_at--112--2171Chr02:18809562..18809586 (25 bp)
ACACCCTATTGCACAAGTCTATACT
LOC_Os02g31850
OsAffx.25860.3.S1_at--6--2051Chr02:18809665..18809689 (25 bp)
ACTTAAGGTCATGTCTAATTCGCAA
LOC_Os02g31850
OsAffx.25860.3.S1_at--652--5491Chr02:18809724..18809748 (25 bp)
GAACACTTGGGAAGAAACCTGCGGT
LOC_Os02g31850
OsAffx.25860.3.S1_at--486--2371Chr02:18809738..18809762 (25 bp)
AAACCTGCGGTTGAGAGTGATGACA
LOC_Os02g31850
OsAffx.25860.3.S1_at--985--671Chr02:18809757..18809781 (25 bp)
ATGACAGTTCTGACTCGAAGGATTC
LOC_Os02g31850
OsAffx.25860.3.S1_at--575--4111Chr02:18809772..18809796 (25 bp)
CGAAGGATTCAATGTCTGATGGCAT
LOC_Os02g31850
OsAffx.25860.3.S1_at--83--3871Chr02:18809787..18809811 (25 bp)
CTGATGGCATATGTGTAGGCGTTGA
LOC_Os02g31850
OsAffx.25860.3.S1_at--445--7991Chr02:18809827..18809851 (25 bp)
GGATGTTTCTGCTGACGAGGATTTC
LOC_Os02g31850
OsAffx.25860.3.S1_at--231--4831Chr02:18809938..18809962 (25 bp)
GCTCATGTCAAAGGGAGAGACCTCT
LOC_Os02g31850
OsAffx.25860.3.S1_at--584--7491Chr02:18810072..18810096 (25 bp)
GTGGTGGTCATGGTCACTATAGGAA
LOC_Os02g31850
Target Sequence 
AGCAGCGTCGAGAACTTATCGCAACACCCTATTGCACAAGTCTATACTTGATTTGGTTAGGCTTGGTGGTACTAGTGCAG
AAACATATGAGAAGACAGTGGAAGTTTTGACAAAGCTGGTGGGAGAACTTAAGGTCATGTCTAATTCGCAAGAAGCAAAC
AACAATGAAATTCGTCGCAGAGGAAGAACACTTGGGAAGAAACCTGCGGTTGAGAGTGATGACAGTTCTGACTCGAAGGA
TTCAATGTCTGATGGCATATGTGTAGGCGTTGAAGACGACGATGGAGAGGATGTTTCTGCTGACGAGGATTTCGTTGTTG
AGGACATGATTGATGTAAACGAAGAAGACATACTCCCTCCAGAGGTTAGAAGAAGTCATGGACGGCCGAGGAGTACCAGG
CTCATGTCAAAGGGAGAGACCTCTAGCAAGGCAAAGAAGAAGAAAGTTGGTGAGAGTACCTCCAACGACGAGTCAATGAA
TCATGCTAAAGAAAGAAAACAACCAACAAAGCAGATTAGGTACTGCAAGCTTTGTGGTGGTCATGGTCACTATAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25860.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis