Browse Element(s) Details


OsAffx.2593.1.S1_s_at

Description tigr:9630.m01223
TID=OsAffx.2593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=2,3-diketo-5-methylthio-1-phosphopentane phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1329011/112,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13240Os.46314.3.S1_at3/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13240OsAffx.7362.1.S1_x_at1/112+7053347..7055389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.2.S1_s_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13250OsAffx.23366.1.S1_at1/112+7056796..7060377transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g13260OsAffx.19451.5.S1_x_at11/112+7062963..7064270hypothetical protein
LOC_Os02g13260OsAffx.19451.4.S1_x_at1/112+7062963..7064270hypothetical protein
LOC_Os02g13270Os.49467.1.S1_at9/112+7066391..7069494Peroxisomal membrane protein PMP22, putative, expressed
LOC_Os02g13280OsAffx.24224.1.S1_at11/112+7071614..7073455hypothetical protein
LOC_Os02g13290OsAffx.2593.1.S1_s_at11/112+7078711..70798482,3-diketo-5-methylthio-1-phosphopentane phosphatase family protein, expressed
LOC_Os02g13300Os.20931.1.S1_s_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13300OsAffx.2594.1.S1_at11/112+7083289..7087339Mitochondrial carrier protein, expressed
LOC_Os02g13310Os.56322.1.S1_at11/112+7097062..7100591Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2593.1.S1_s_at--650--1931Chr02:7079450..7079474 (25 bp)
ACGGAGATGGACTACGTGATGCCGA
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--159--7851Chr02:7079481..7079505 (25 bp)
GGTACCCGGTGTGGGACCTCATCGC
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--736--1091Chr02:7079544..7079568 (25 bp)
AGTGGGCGGACTTCGAGGACCTCGA
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--287--9331Chr02:7079589..7079613 (25 bp)
TCGCCGAGTGCCTCACGTCGGAACA
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--575--1131Chr02:7079595..7079619 (25 bp)
AGTGCCTCACGTCGGAACACGACGA
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--177--4711Chr02:7079680..7079704 (25 bp)
GCTGGCTTCCGGTCAGGAGGCAATT
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--1111--951Chr02:7079694..7079718 (25 bp)
AGGAGGCAATTCTGCCCAAGGCAGT
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--581--3151Chr02:7079701..7079725 (25 bp)
AATTCTGCCCAAGGCAGTTCACGTG
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--992--8231Chr02:7079713..7079737 (25 bp)
GGCAGTTCACGTGCCTAATTGACTG
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--176--1911Chr02:7079721..7079745 (25 bp)
ACGTGCCTAATTGACTGGGCCAGAT
LOC_Os02g13290
OsAffx.2593.1.S1_s_at--919--8651Chr02:7079736..7079760 (25 bp)
TGGGCCAGATGATAGATTAACGAAC
LOC_Os02g13290
Target Sequence 
ACGGAGATGGACTACGTGATGCCGAGGAAGGGGTACCCGGTGTGGGACCTCATCGCCGGCGGCGACCGCGCCGCCGTCCG
GGCCGACGTCCGCGAGTGGGCGGACTTCGAGGACCTCGAGGCGGTGCTGCTCGGCATCGTCGCCGAGTGCCTCACGTCGG
AACACGACGACGCCGACGACGATGGCGGCGAGGCGGCGCCGCCGGCGGAGTGCCGTGCGCTGCCGGCGACGCTGGCTTCC
GGTCAGGAGGCAATTCTGCCCAAGGCAGTTCACGTGCCTAATTGACTGGGCCAGATGATAGATTAACGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2593.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis