Browse Element(s) Details


OsAffx.25953.1.S1_at

Description tigr:9632.m00898
TID=OsAffx.25953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1026011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10200Os.10703.2.S1_x_at1/114+5492254..5498352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10210OsAffx.25951.1.S1_at10/114+5498787..5501220hypothetical protein
LOC_Os04g10219NANA4+5502856..5503567hypothetical protein
LOC_Os04g10230OsAffx.25952.2.S1_at10/114+5503908..5504930hypothetical protein
LOC_Os04g10240Os.12939.1.S1_s_at10/114+5506869..5510298expressed protein
LOC_Os04g10250OsAffx.14731.1.S1_at11/114+5514966..5518273hypothetical protein
LOC_Os04g10250OsAffx.14731.2.S1_at2/114+5514966..5518273hypothetical protein
LOC_Os04g10260OsAffx.25953.1.S1_at11/114+5519583..5525480hypothetical protein
LOC_Os04g10270Os.31312.5.S1_x_at5/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10270Os.31312.2.S1_x_at4/114+5527714..5530826retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_x_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10280OsAffx.22492.1.S1_at1/114+5531456..5537590retrotransposon protein, putative, unclassified
LOC_Os04g10290OsAffx.25954.1.S1_at10/114+5539079..5541212hypothetical protein
LOC_Os04g10300OsAffx.30349.1.S1_at11/114+5543179..5545562hypothetical protein
LOC_Os04g10300Os.20851.1.A1_x_at1/114+5543179..5545562hypothetical protein
LOC_Os04g10310OsAffx.13745.1.S1_at11/114+5546820..5550446hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25953.1.S1_at--1011--5871Chr04:5524706..5524730 (25 bp)
GAGCCCATTGGTAGTACTGCTTCTC
LOC_Os04g10260
OsAffx.25953.1.S1_at--1142--9311Chr04:5524683..5524707 (25 bp)
TCCCTTTGCTGCAGAGCTTGCGAAT
LOC_Os04g10260
OsAffx.25953.1.S1_at--181--10812Chr04:5550682..5550706 (25 bp)
TTGTCTTGACTGATCCTAGGAGGGT
NONE
OsAffx.25953.1.S1_at--554--6571Chr04:5524466..5524490 (25 bp)
GATTCTCAACAATCGGGCATCTGCC
LOC_Os04g10260
OsAffx.25953.1.S1_at--249--7591Chr04:5524452..5524476 (25 bp)
GGGCATCTGCCACGAAGTCAAAGGA
LOC_Os04g10260
OsAffx.25953.1.S1_at--1039--5011Chr04:5524388..5524412 (25 bp)
GCAGGTGCTGCAGTCGGAAACTACT
LOC_Os04g10260
OsAffx.25953.1.S1_at--16--7951Chr04:5524201..5524225 (25 bp)
GGATCAGCTAGCACAGTTGGGAGAC
LOC_Os04g10260
OsAffx.25953.1.S1_at--254--5991Chr04:5519740..5519759 (20 bp)
GAGACGCTCTGACTTCAAGATTGGC
LOC_Os04g10260
OsAffx.25953.1.S1_at--983--2811Chr04:5519724..5519748 (25 bp)
AAGATTGGCTGCTGAGGCCCAGCAC
LOC_Os04g10260
OsAffx.25953.1.S1_at--342--8411Chr04:5519709..5519733 (25 bp)
GGCCCAGCACCTAAGAGCTGTTGTT
LOC_Os04g10260
OsAffx.25953.1.S1_at--272--2211Chr04:5519643..5519667 (25 bp)
ACAACTGAGCTCTGACATCGACCAA
LOC_Os04g10260
Target Sequence 
GAGCCCATTGGTAGTACTGCTTCTCCCTTTGCTGCAGAGCTTGCGAATGTGAAATTCACTGAGGATGAGAAGAAGAAGAT
TGTGATGGATAAATCCCTCTCAGAGATTGTCTTGACTGATCCTAGGAGGGTCAAAAGGATTCTCAACAATCGGGCATCTG
CCACGAAGTCAAAGGAGAAAAAGATGAAGCACGTAGGGGAGCTTCAACGCAAATTGCAGGTGCTGCAGTCGGAAACTACT
ACATTAGGTGCACAAGTGACAGTGATGCAGAGGAACAACAATGAGCTTGTATCACAGAACAATGAACTGAAAACTAGGTT
GCAAGCAATGGATCAGCTAGCACAGTTGGGAGACGCTCTGACTTCAAGATTGGCTGCTGAGGCCCAGCACCTAAGAGCTG
TTGTTAGTGAGATCAGTGATCCAAATCTGCCAAGTGGTTCACACCAACAACTGAGCTCTGACATCGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis