Browse Element(s) Details


OsAffx.25970.2.S1_x_at

Description tigr:9632.m00961
TID=OsAffx.25970.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g108709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10820OsAffx.13200.2.S1_x_at4/114+5852433..5852828retrotransposon protein, putative, unclassified
LOC_Os04g10830OsAffx.25969.1.S1_at10/114+5855080..5857645hypothetical protein
LOC_Os04g10840OsAffx.21897.5.S1_x_at4/114+5860417..5863341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10850NANA4+5863657..5869766retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10860OsAffx.24317.6.S1_x_at7/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10860OsAffx.12663.1.S1_at1/114+5870695..5873243transposon protein, putative, unclassified
LOC_Os04g10870OsAffx.25970.2.S1_s_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_at11/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.2.S1_x_at9/114+5874430..5876117hypothetical protein
LOC_Os04g10870OsAffx.25970.1.S1_at3/114+5874430..5876117hypothetical protein
LOC_Os04g10880OsAffx.21755.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880OsAffx.10222.1.S1_x_at2/114+5879059..5882459hypothetical protein
LOC_Os04g10880Os.45902.1.A1_x_at1/114+5879059..5882459hypothetical protein
LOC_Os04g10890OsAffx.25972.1.S1_at11/114+5884795..5886768Zinc knuckle family protein
LOC_Os04g10900NANA4+5888237..5889715retrotransposon protein, putative, unclassified
LOC_Os04g10910OsAffx.13762.1.S1_at10/114+5891722..5894579hypothetical protein
LOC_Os04g10924OsAffx.25973.1.S1_at11/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.13763.1.S1_at6/114+5900306..5904584hypothetical protein
LOC_Os04g10924OsAffx.16205.1.S1_at2/114+5900306..5904584hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25970.2.S1_x_at--191--6591NONE
GATTCCGCCGTTCAGCTTGATGATT
NONE
OsAffx.25970.2.S1_x_at--487--9291NONE
TCCGCCGTTCAGCTTGATGATTTAA
NONE
OsAffx.25970.2.S1_x_at--241--8311Chr04:5875025..5875049 (25 bp)
GGCTCGAAAACCTTGTGTTGGCTAG
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--70--5571Chr04:5874604..5874628 (25 bp)
GAAAGACATGGTTGTAGATGGCGAA
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--1066--3491Chr04:5874598..5874622 (25 bp)
CATGGTTGTAGATGGCGAAGAGCTA
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--234--5371Chr04:5874582..5874606 (25 bp)
GAAGAGCTAATGCACGGTCCTCAGC
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--756--3091Chr04:5874531..5874555 (25 bp)
AATACGCCACCAATCGTAGTCATCC
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--771--4411Chr04:5874526..5874550 (25 bp)
GCCACCAATCGTAGTCATCCAGGAT
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--898--3371Chr04:5874524..5874548 (25 bp)
CACCAATCGTAGTCATCCAGGATGA
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--166--4391Chr04:5874522..5874546 (25 bp)
CCAATCGTAGTCATCCAGGATGAGG
LOC_Os04g10870
OsAffx.25970.2.S1_x_at--154--8451Chr04:5874490..5874514 (25 bp)
GGCCACCACCTCGTGTGAGAAAATG
LOC_Os04g10870
Target Sequence 
GATTCCGCCGTTCAGCTTGATGATTTAACATGTGGTGATGAAAACATGTTAGCCATGTTTAATGTTCTAAAGAACAAAAA
ATCTGCAAGGCTCGAAAACCTTGTGTTGGCTAGAAATTCATTTTCTAGAACTGTATACAACATAAATACTTTGTCAAATC
TTGTTTATGTTGGAAGGGTACAAATAACTGTGGATGGTGATGGCCGTCATATTGTATACCCAAGGAATGCACCAACGGCA
GAAGACATAGCTAGTGGAAAGATGATGAAAGACATGGTTGTAGATGGCGAAGAGCTAATGCACGGTCCTCAGCTCACCAC
ACATGGCACCAATGCCAGCAATACGCCACCAATCGTAGTCATCCAGGATGAGGAGGCGGCGGCCACCACCTCGTGTGAGA
AAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25970.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis