Browse Element(s) Details


OsAffx.25996.1.S1_at

Description tigr:9632.m01091
TID=OsAffx.25996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1216011/11Aspartic proteinase nepenthesin-2 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12130Os.46785.2.S1_x_at2/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.442.1.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.30226.2.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12140OsAffx.25995.1.S1_at11/114+6663496..6673025expressed protein
LOC_Os04g12150OsAffx.13784.1.S1_at11/114+6675583..6676660hypothetical protein
LOC_Os04g12160OsAffx.25996.1.S1_at11/114+6683892..6684443Aspartic proteinase nepenthesin-2 precursor, putative
LOC_Os04g12170NANA4+6686132..6688798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12180OsAffx.3774.1.S1_at11/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12180OsAffx.20742.3.S1_x_at1/114+6689236..6692022Protein kinase domain containing protein
LOC_Os04g12190OsAffx.15781.5.S1_x_at11/114+6694449..6696402transposase, putative
LOC_Os04g12190OsAffx.15781.4.S1_x_at8/114+6694449..6696402transposase, putative
LOC_Os04g12200OsAffx.25997.1.S1_at10/114+6698571..6700127hypothetical protein
LOC_Os04g12210Os.31613.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12210Os.17297.1.S1_at1/114+6702073..6713823retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25996.1.S1_at--777--7311Chr04:6683922..6683946 (25 bp)
GTGCTCTTGATCTGCTCAAGTGTCC
LOC_Os04g12160
OsAffx.25996.1.S1_at--196--9731Chr04:6683937..6683961 (25 bp)
TCAAGTGTCCTTGCCTTAACTAGTG
LOC_Os04g12160
OsAffx.25996.1.S1_at--914--7251Chr04:6683943..6683967 (25 bp)
GTCCTTGCCTTAACTAGTGGCGTGG
LOC_Os04g12160
OsAffx.25996.1.S1_at--615--9671Chr04:6683983..6684007 (25 bp)
TCACCCATGTCGACGCCAAGGGAGG
LOC_Os04g12160
OsAffx.25996.1.S1_at--529--1071Chr04:6684001..6684025 (25 bp)
AGGGAGGCCGCTACACCACGACGGA
LOC_Os04g12160
OsAffx.25996.1.S1_at--160--4131Chr04:6684121..6684145 (25 bp)
CGCAGGGCGAGTACTTCACGGAGTA
LOC_Os04g12160
OsAffx.25996.1.S1_at--669--2051Chr04:6684133..6684157 (25 bp)
ACTTCACGGAGTACCTCATCGGCGA
LOC_Os04g12160
OsAffx.25996.1.S1_at--380--4011Chr04:6684233..6684257 (25 bp)
CGTCGCCGACCGCTGTTTCAAGCAG
LOC_Os04g12160
OsAffx.25996.1.S1_at--541--6831Chr04:6684247..6684271 (25 bp)
GTTTCAAGCAGCACCTTCCTCTCTA
LOC_Os04g12160
OsAffx.25996.1.S1_at--839--4011Chr04:6684337..6684361 (25 bp)
CGTACGGGCACTTGTTCCTCACTGG
LOC_Os04g12160
OsAffx.25996.1.S1_at--510--10431Chr04:6684386..6684410 (25 bp)
TTACCCCTATAGTACTACCAATCCG
LOC_Os04g12160
Target Sequence 
GTGCTCTTGATCTGCTCAAGTGTCCTTGCCTTAACTAGTGGCGTGGGGCTCCACTTCGAGCTCACCCATGTCGACGCCAA
GGGAGGCCGCTACACCACGACGGAACGCGCACGTCGCGCCGTCGATCGCAGCCGGCGGCGGCTGGCGGCATCCATGTCGT
CCGCCGGGCACAGCGACGTGCGCGCGCCTGTGCAGCGAGCGCAGGGCGAGTACTTCACGGAGTACCTCATCGGCGACCCG
CCGCAGCACGCGGAGGCCATCGTCGACACCGGCAGCAACCTTGTCTGGACGCAGTGCACCGACTGCCTCGCCGTCGCCGA
CCGCTGTTTCAAGCAGCACCTTCCTCTCTACAACTACTCCGCGTCGCGCAGCGCCAAGCCCGTGCCGTGCACCGACGCGC
TCTGCCAAGCCAACCCGTACGGGCACTTGTTCCTCACTGGTGGAGAAAGGAGCTTTACTCCCGGTTACCCCTATAGTACT
ACCAATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis