Browse Element(s) Details


OsAffx.26013.1.S1_at

Description tigr:9632.m01180
TID=OsAffx.26013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1305011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13000OsAffx.7046.1.S1_at7/114+7150545..7154748retrotransposon protein, putative, LINE subclass
LOC_Os04g13010OsAffx.26012.1.S1_at11/114+7157534..7158379F-box domain containing protein
LOC_Os04g13020NANA4+7160118..7163087retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13030Os.10703.2.S1_x_at1/114+7163405..7169503retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g13040OsAffx.3780.1.S1_at11/114+7170107..7171009F-box domain containing protein
LOC_Os04g13050OsAffx.26013.1.S1_at11/114+7174762..7180150hypothetical protein
LOC_Os04g13050Os.37083.1.S1_at1/114+7174762..7180150hypothetical protein
LOC_Os04g13060OsAffx.26014.1.S1_at11/114+7186357..7187052hypothetical protein
LOC_Os04g13070NANA4+7188918..7189205hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.5782.1.S1_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13080OsAffx.1196.1.S1_x_at1/114+7193739..7198139hypothetical protein
LOC_Os04g13090OsAffx.13796.1.S1_at11/114+7201164..7202278Vignain precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26013.1.S1_at--864--2111Chr04:7176251..7176275 (25 bp)
ACATGGTGGCATGCATTGGTAAATC
LOC_Os04g13050
OsAffx.26013.1.S1_at--816--851Chr04:7176023..7176045 (23 bp)
ATGGCACCACCATCAATCTTATGAG
LOC_Os04g13050
OsAffx.26013.1.S1_at--967--691Chr04:7175420..7175442 (23 bp)
ATGAGGCATAAGTGGGCACGGCCCT
LOC_Os04g13050
OsAffx.26013.1.S1_at--320--731Chr04:7175392..7175416 (25 bp)
ATGTTGGAGCTCGTAGATTCGGCTT
LOC_Os04g13050
OsAffx.26013.1.S1_at--1066--3251Chr04:7175277..7175301 (25 bp)
CAACTGCAATAAGTGGTTCGCTGAT
LOC_Os04g13050
OsAffx.26013.1.S1_at--49--6711Chr04:7175262..7175286 (25 bp)
GTTCGCTGATAGGTACAAGGCCACG
LOC_Os04g13050
OsAffx.26013.1.S1_at--1031--7991Chr04:7174943..7174967 (25 bp)
GGATGTGTTTCGAAGCTACCAAGGA
LOC_Os04g13050
OsAffx.26013.1.S1_at--385--8191Chr04:7174921..7174945 (25 bp)
GGAAGCTGTGCAATGCTCGTACTCC
LOC_Os04g13050
OsAffx.26013.1.S1_at--838--10051Chr04:7174894..7174918 (25 bp)
TAGGTTCGAGCCAAGCCAAGATCCC
LOC_Os04g13050
OsAffx.26013.1.S1_at--852--6171Chr04:7174845..7174869 (25 bp)
GAGGAGTTCATACCCGACTTGTCGA
LOC_Os04g13050
OsAffx.26013.1.S1_at--1154--2791Chr04:7174821..7174845 (25 bp)
AAGATGATCGATACTCCTGGCGGAA
LOC_Os04g13050
Target Sequence 
ACATGGTGGCATGCATTGGTAAATCATTAACAATGTGGGAGTTGAGGTCGTGGAGGCCATATGGCACCACCATCAATCTT
ATGAGGCATAAGTGGGCACGGCCCTGTGATGTTGGAGCTCGTAGATTCGGCTTCATGACTAGCAATATGGCAGAGAGTTT
CAACAATATGCTCAAAGGCATTCATAGGCTACCAGTAACATCCATCGTGGCATACACGTTCAACAACTGCAATAAGTGGT
TCGCTGATAGGTACAAGGCCACGATGGCTGCAATACAAAAGTGTGAGAGGTGGCCGAAAAGAATTAAGGAGTTTGAAATA
CAAAAATTTTGTAGACTACGATGTATGGATGAGGAAGTGCCCCCTCGGATGTGTTTCGAAGCTACCAAGGAAGCTGTGCA
ATGCTCGTACTCCCCTAGGTTCGAGCCAAGCCAAGATCCCACTCAATGGCCAAGTGATGACGGTGAGGAGTTCATACCCG
ACTTGTCGAAGATGATCGATACTCCTGGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis