Browse Element(s) Details


OsAffx.26070.1.S1_at

Description tigr:9631.m02165
TID=OsAffx.26070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2166011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26070.1.S1_at--288--3593Chr08:18332711..18332735 (25 bp)
CATTTCAATTAATAGCATTTGGCTC
NONE
OsAffx.26070.1.S1_at--667--3173Chr08:18332716..18332740 (25 bp)
CAATTAATAGCATTTGGCTCAACCT
NONE
OsAffx.26070.1.S1_at--344--8313Chr08:18332731..18332755 (25 bp)
GGCTCAACCTACAATGAGTAGGCTT
NONE
OsAffx.26070.1.S1_at--378--6552Chr08:18332765..18332789 (25 bp)
GATTTTGGTGTATCCATGAACCTGT
NONE
OsAffx.26070.1.S1_at--609--7752Chr08:18332771..18332795 (25 bp)
GGTGTATCCATGAACCTGTACTCTT
NONE
OsAffx.26070.1.S1_at--1123--6892Chr08:18332774..18332798 (25 bp)
GTATCCATGAACCTGTACTCTTTTA
NONE
OsAffx.26070.1.S1_at--471--651Chr03:12344637..12344661 (25 bp)
ATGAACCTGTACTCTTTTACCGTGT
LOC_Os03g21660
OsAffx.26070.1.S1_at--1095--5431Chr03:12344639..12344663 (25 bp)
GAACCTGTACTCTTTTACCGTGTTG
LOC_Os03g21660
OsAffx.26070.1.S1_at--740--8751Chr03:12344644..12344668 (25 bp)
TGTACTCTTTTACCGTGTTGCACTA
LOC_Os03g21660
OsAffx.26070.1.S1_at--493--2011Chr03:12344647..12344671 (25 bp)
ACTCTTTTACCGTGTTGCACTATAT
LOC_Os03g21660
OsAffx.26070.1.S1_at--93--1791Chr03:12344655..12344679 (25 bp)
ACCGTGTTGCACTATATTTTATTTT
LOC_Os03g21660
Target Sequence 
CATTTCAATTAATAGCATTTGGCTCAACCTACAATGAGTAGGCTTTTTTTGAATAGATTTTGGTGTATCCATGAACCTGT
ACTCTTTTACCGTGTTGCACTATATTTTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26070.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis