Browse Element(s) Details


OsAffx.26082.1.S1_x_at

Description gb:NM_193558.1
DB_XREF= gi:34914199
GEN=OSJNBb0049O23.11
TID=OsAffx.26082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.11 (OSJNBb0049O23.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3840011/11retrotransposon protein, putative, unclassified
LOC_Os04g206702/11hypothetical protein
LOC_Os03g202401/11hypothetical protein
LOC_Os06g027001/11retrotransposon protein, putative, unclassified
LOC_Os04g184501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38359Os.10310.1.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.10310.2.S1_at11/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.21209.1.S1_at9/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.17446.1.S1_at2/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.7398.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.47760.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359OsAffx.8967.1.S1_x_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38359Os.57395.1.S1_at1/111+21852356..21876668peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38380OsAffx.23554.3.S1_s_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38380OsAffx.23554.3.S1_at11/111+21882411..21883604hypothetical protein
LOC_Os01g38390OsAffx.23554.2.S1_s_at11/111+21884103..21884800hypothetical protein
LOC_Os01g38400OsAffx.26082.1.S1_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.26082.1.S1_x_at11/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38400OsAffx.16960.1.S1_at1/111+21897056..21897970retrotransposon protein, putative, unclassified
LOC_Os01g38410Os.46715.1.S1_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38410Os.46715.1.S1_x_at1/111+21912039..21913992retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420Os.52609.1.S1_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38420OsAffx.22947.2.S1_x_at1/111+21914135..21917816retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26082.1.S1_x_at--626--5291Chr01:21897188..21897212 (25 bp)
GAAGGGCAAACTCAAAAGACTCGAT
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--1088--8211Chr01:21897192..21897216 (25 bp)
GGCAAACTCAAAAGACTCGATTCCC
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--913--531Chr01:21897264..21897288 (25 bp)
ATCGCGCATTGTTTAATCATTCTGG
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--839--9591Chr01:21897280..21897304 (25 bp)
TCATTCTGGTGTTTTGGCGGATACA
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--298--9737Chr05:12270656..12270680 (25 bp)
TCAAGGTAACAGTTGATGAGTTAAT
NONE
OsAffx.26082.1.S1_x_at--274--5511Chr01:21897377..21897401 (25 bp)
GAACAACAACCGCATCGTCTCGAGG
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--345--2471Chr01:21897378..21897402 (25 bp)
AACAACAACCGCATCGTCTCGAGGG
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--962--4971Chr01:21897388..21897412 (25 bp)
GCATCGTCTCGAGGGGCAAGCACAT
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--937--2712Chr01:21897405..21897429 (25 bp)
AAGCACATCAGTGTCAGCATGATGC
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--916--5112Chr01:21897407..21897431 (25 bp)
GCACATCAGTGTCAGCATGATGCGC
LOC_Os01g38400
OsAffx.26082.1.S1_x_at--319--6351Chr01:21897425..21897449 (25 bp)
GATGCGCTATATCAACAATATCGGC
LOC_Os01g38400
Target Sequence 
GAAGGGCAAACTCAAAAGACTCGATTCCCCAAGCCGATAGTTGAAATACTTCAAGATACAGTTGATGAAGCAGTTCATCG
CGCATTGTTTAATCATTCTGGTGTTTTGGCGGATACATTACAAAATTTGATCAAGGTAACAGTTGATGAGTTAATTATTC
AAAAAAGCCAGCTCGGGGGGCAGATTGAAGAACAACAACCGCATCGTCTCGAGGGGCAAGCACATCAGTGTCAGCATGAT
GCGCTATATCAACAATATCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26082.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis