Browse Element(s) Details


OsAffx.26273.1.S1_at

Description tigr:9632.m03010
TID=OsAffx.26273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3163011/11hypothetical protein
LOC_Os02g155606/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31620Os.23132.1.S2_at11/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31620Os.23132.1.S1_at10/114+18746423..18750775RNA recognition motif family protein, expressed
LOC_Os04g31630Os.20441.1.A1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31630OsAffx.26273.1.S1_at11/114+18761515..18762983hypothetical protein
LOC_Os04g31640OsAffx.26274.1.S1_at9/114+18769047..18771463hypothetical protein
LOC_Os04g31640OsAffx.17597.1.S1_x_at1/114+18769047..18771463hypothetical protein
LOC_Os04g31650Os.35344.3.S1_x_at9/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650Os.35344.18.S1_x_at6/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31650OsAffx.22940.5.S1_x_at3/114+18773274..18776539transposon protein, putative, Mutator sub-class
LOC_Os04g31660OsAffx.14073.1.S1_at11/114+18779551..18779973hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26273.1.S1_at--4--4631Chr04:18761578..18761602 (25 bp)
GCGATGGCGAACAGGAGCAACAACA
LOC_Os04g31630
OsAffx.26273.1.S1_at--481--6231Chr04:18761580..18761604 (25 bp)
GATGGCGAACAGGAGCAACAACAGC
LOC_Os04g31630
OsAffx.26273.1.S1_at--194--1712Chr04:18762869..18762893 (25 bp)
ACCACGGGTTGTCGCCAGTCCTGAA
LOC_Os04g31630
OsAffx.26273.1.S1_at--1054--1912Chr04:18762872..18762896 (25 bp)
ACGGGTTGTCGCCAGTCCTGAAGTC
LOC_Os04g31630
OsAffx.26273.1.S1_at--29--7931Chr04:18762875..18762899 (25 bp)
GGTTGTCGCCAGTCCTGAAGTCGGT
LOC_Os04g31630
OsAffx.26273.1.S1_at--572--8711Chr04:18762878..18762902 (25 bp)
TGTCGCCAGTCCTGAAGTCGGTCTC
LOC_Os04g31630
OsAffx.26273.1.S1_at--993--3451Chr04:18762884..18762908 (25 bp)
CAGTCCTGAAGTCGGTCTCCACTCA
LOC_Os04g31630
OsAffx.26273.1.S1_at--991--2154Chr04:18762908..18762932 (25 bp)
ACACCCACGGCACGAAGAGAACCTT
LOC_Os04g31630
OsAffx.26273.1.S1_at--135--1814Chr04:18762910..18762934 (25 bp)
ACCCACGGCACGAAGAGAACCTTGT
LOC_Os04g31630
OsAffx.26273.1.S1_at--589--8232Chr04:18762916..18762940 (25 bp)
GGCACGAAGAGAACCTTGTCGTCGT
LOC_Os04g31630
OsAffx.26273.1.S1_at--1032--3332Chr04:18762918..18762942 (25 bp)
CACGAAGAGAACCTTGTCGTCGTCG
LOC_Os04g31630
Target Sequence 
GCGATGGCGAACAGGAGCAACAACAGCAGTAGCAGCAGCGGCAGAACGTCGTCGCCGGCTGCGTTGCTGCGGTGGGGGGC
GCCGGAGCCGGCGCCGCGCTTACGCCCACCACGGGTTGTCGCCAGTCCTGAAGTCGGTCTCCACTCACACCCACGGCACG
AAGAGAACCTTGTCGTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis