Browse Element(s) Details


OsAffx.2629.1.S1_at

Description tigr:9630.m01472
TID=OsAffx.2629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1571011/11Chemocyanin precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15680OsAffx.2628.1.S1_at9/112+8829117..8829631hypothetical protein
LOC_Os02g15690Os.27198.1.S1_at11/112+8834266..8837490glycoside hydrolase family 28 protein, putative, expressed
LOC_Os02g15700Os.49774.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15700Os.54037.1.S1_s_at11/112+8842946..8844247expressed protein
LOC_Os02g15704Os.53480.1.S1_x_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.56035.1.S1_at7/112+8850621..8851895expressed protein
LOC_Os02g15704Os.27237.3.A1_x_at1/112+8850621..8851895expressed protein
LOC_Os02g15710OsAffx.2629.1.S1_at11/112+8854325..8854983Chemocyanin precursor, putative
LOC_Os02g15720OsAffx.4864.1.S1_at2/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.18048.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15720OsAffx.30486.1.S1_at1/112+8856564..8862454hypothetical protein
LOC_Os02g15730OsAffx.24270.1.S1_x_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15730OsAffx.24270.1.S1_at11/112+8867082..8867538Chemocyanin precursor, putative, expressed
LOC_Os02g15740Os.16163.1.S1_at8/112+8869106..8871518expressed protein
LOC_Os02g15750Os.16733.1.S1_at11/112+8873039..8876439expressed protein
LOC_Os02g15760OsAffx.2630.1.S1_at11/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g15760OsAffx.2630.1.S1_x_at10/112+8879440..8882658Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009856biological_processpollination
GO:0048653biological_processanther development
GO:0031225cellular_componentanchored to membrane
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2629.1.S1_at--761--7171Chr02:8854866..8854890 (25 bp)
GTCGGCGACAACAAGGGATGGTCCT
LOC_Os02g15710
OsAffx.2629.1.S1_at--310--2451Chr02:8854857..8854881 (25 bp)
AACAAGGGATGGTCCTTCGGCGTCG
LOC_Os02g15710
OsAffx.2629.1.S1_at--801--1431Chr02:8854823..8854847 (25 bp)
AGAACGGCAAGCGAATCCAGCCCGG
LOC_Os02g15710
OsAffx.2629.1.S1_at--293--5171Chr02:8854817..8854841 (25 bp)
GCAAGCGAATCCAGCCCGGCGACGA
LOC_Os02g15710
OsAffx.2629.1.S1_at--251--4931Chr02:8854514..8854534 (21 bp)
GCTTGTGTTCAAGTATGACGCGAAG
LOC_Os02g15710
OsAffx.2629.1.S1_at--568--671Chr02:8854500..8854524 (25 bp)
ATGACGCGAAGATTCACAACGTGGT
LOC_Os02g15710
OsAffx.2629.1.S1_at--573--8911Chr02:8854440..8854464 (25 bp)
TGACCGGGCCGTCCAAGGTGTACAA
LOC_Os02g15710
OsAffx.2629.1.S1_at--831--7471Chr02:8854435..8854459 (25 bp)
GGGCCGTCCAAGGTGTACAACTCCG
LOC_Os02g15710
OsAffx.2629.1.S1_at--456--9211Chr02:8854429..8854453 (25 bp)
TCCAAGGTGTACAACTCCGGCGACG
LOC_Os02g15710
OsAffx.2629.1.S1_at--1065--9591Chr02:8854371..8854395 (25 bp)
TCATCTGCAGCATCCGGGACCACTG
LOC_Os02g15710
OsAffx.2629.1.S1_at--960--3971Chr02:8854357..8854381 (25 bp)
CGGGACCACTGCACCGCGGGCATGA
LOC_Os02g15710
Target Sequence 
GTCGGCGACAACAAGGGATGGTCCTTCGGCGTCGCCGGCTGGGAGAACGGCAAGCGAATCCAGCCCGGCGACGAGCTTGT
GTTCAAGTATGACGCGAAGATTCACAACGTGGTGGAGGTGGACCGGGCCGGGTACGGCGGGTGCACGGTGACCGGGCCGT
CCAAGGTGTACAACTCCGGCGACGACCGGATCAAGCTCGCCGGCGGCGAGGCCTTCTTCATCTGCAGCATCCGGGACCAC
TGCACCGCGGGCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis