Browse Element(s) Details


OsAffx.26340.1.S1_x_at

Description tigr:9632.m03378
TID=OsAffx.26340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3513010/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35080Os.9839.1.S1_at11/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35080OsAffx.26339.1.S1_x_at10/114+21135719..21139578Protein kinase domain containing protein, expressed
LOC_Os04g35090Os.426.1.S1_at8/114+21142239..2114481040S ribosomal protein S10, putative, expressed
LOC_Os04g35100Os.8221.1.S1_a_at11/114+21144844..21148155MAP3K-like protein kinase, putative, expressed
LOC_Os04g35114Os.36212.1.S1_at10/114+21153387..21157199Protein kinase domain containing protein, expressed
LOC_Os04g35130Os.9065.1.S1_at11/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35130OsAffx.26340.1.S1_x_at10/114+21162406..21165881Harpin-induced protein 1 containing protein, expressed
LOC_Os04g35140Os.54412.1.S1_at11/114+21171564..21174134Subtilisin N-terminal Region family protein, expressed
LOC_Os04g35150OsAffx.14142.1.S1_at11/114+21174989..21178008Thioredoxin family protein
LOC_Os04g35160OsAffx.14143.1.S1_at11/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35160OsAffx.15607.1.S1_at1/114+21181147..21184341CorA-like Mg2+ transporter protein, expressed
LOC_Os04g35170Os.23819.1.S1_s_at11/114+21186131..21189779expressed protein
LOC_Os04g35180Os.54106.1.S1_at10/114+21189911..21192157co-chaperone GrpE family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26340.1.S1_x_at--208--7211Chr04:21164145..21164267 (25 bp)
GTCGTCTCCATCAACAGCATCACGT
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--10--1511Chr04:21164258..21164282 (25 bp)
AGCATCACGTTCCACAACTTCGTGA
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--459--9211Chr04:21164268..21164292 (25 bp)
TCCACAACTTCGTGATCCAGGCGGG
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--106--1931Chr04:21164339..21164363 (25 bp)
ACGGTGAGGATGACGTTCCGGAACA
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--784--871NONE
ATGGCCTCCGGCAACGTGAAGTACT
NONE
OsAffx.26340.1.S1_x_at--1026--7331Chr04:21165328..21165352 (25 bp)
GTGAAGTACTTCTACCAGTCGAGGA
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--67--4351Chr04:21165342..21165366 (25 bp)
CCAGTCGAGGAAGAGCTCGCGGCAC
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--876--5151Chr04:21165509..21165533 (25 bp)
GCAAGCTGGTGAAGCCCAAGTTCCT
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--360--8611Chr04:21165515..21165539 (25 bp)
TGGTGAAGCCCAAGTTCCTGACCAA
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--581--1231Chr04:21165527..21165551 (25 bp)
AGTTCCTGACCAACGTGCAGTGCAG
LOC_Os04g35130
OsAffx.26340.1.S1_x_at--115--9051Chr04:21165542..21165566 (25 bp)
TGCAGTGCAGCGTCAGGCTCGACGT
LOC_Os04g35130
Target Sequence 
GTCGTCTCCATCAACAGCATCACGTTCCACAACTTCGTGATCCAGGCGGGGACGGACGCGTCGCTGGTGCCGACGGAGCT
GTCGACGGTGAACGCGACGGTGAGGATGACGTTCCGGAACACGGGGAGCTTCTTCGGCGTGCACGTCACGGCGGAGCCCC
TCACGCTCTACTACTACCAGCTCCTCATGGCCTCCGGCAACGTGAAGTACTTCTACCAGTCGAGGAAGAGCTCGCGGCAC
GTGGCGGTGGCGGTGGTCGGCGACAAGGTGCCGCTGTACGGCGGCGGGTCGGGGCTGAGCAGCACGCCGGTGAAGGGCGC
GCCGCCGGCGCCGGTGCCGCTGCAGCTGGCGGTGCGGTTCAGGTCGCGGGCGTTCGTGCTGGGCAAGCTGGTGAAGCCCA
AGTTCCTGACCAACGTGCAGTGCAGCGTCAGGCTCGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26340.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis