Browse Element(s) Details


OsAffx.2642.1.S1_s_at

Description tigr:9630.m01557
TID=OsAffx.2642.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1669011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16660Os.53301.1.S1_at11/112+9514337..9518276ATPase, AAA family protein, expressed
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2642.1.S1_s_at--653--1031Chr02:9540696..9540720 (25 bp)
AGGTCTCCCCTGACATAATTATGTT
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--668--6771Chr02:9540764..9540788 (25 bp)
GTTAGCCTTACATATCCTGAAGGTT
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--69--8611Chr02:9540781..9540805 (25 bp)
TGAAGGTTTGGACACTCTAGTTAGT
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--183--3731Chr02:9540795..9540819 (25 bp)
CTCTAGTTAGTCATAAGGTGGTTCA
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--431--10251Chr02:9540821..9540845 (25 bp)
TTTGGGAGGGCTGATACTGCATGCA
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--323--7631Chr02:9540881..9540905 (25 bp)
GGGACATTTGTTAGGCCTGAGCTTG
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--328--10091Chr02:9540892..9540916 (25 bp)
TAGGCCTGAGCTTGGTACTGGGAAT
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--1138--7831Chr02:9540917..9540941 (25 bp)
GGTACACACATATTACTTGTTTCAG
LOC_Os02g16690
OsAffx.2642.1.S1_s_at--305--3472Chr05:8899764..8899788 (25 bp)
CAGTGGCATAATTCCATGGTTGAGT
NONE
OsAffx.2642.1.S1_s_at--86--7992Chr05:8899805..8899829 (25 bp)
GGATGCATGGATGGTTGCCAAACAT
NONE
OsAffx.2642.1.S1_s_at--574--5532Chr05:8899957..8899981 (25 bp)
GAAACATTCAGCTTATACTCAAGTG
NONE
Target Sequence 
AGGTCTCCCCTGACATAATTATGTTGATTACTTCGTCCGTACTGCACCCCTATCATTTGGACCATATTGTTAGCCTTACA
TATCCTGAAGGTTTGGACACTCTAGTTAGTCATAAGGTGGTTCAGTTTGGGAGGGCTGATACTGCATGCAGTCATCAAAA
TAGACATACAATTGTTAGGACAACAGGGACATTTGTTAGGCCTGAGCTTGGTACTGGGAATGGTACACACATATTACTTG
TTTCAGAGGCAGAAGCTGGATATGTGTCCATAAGGAATTTGCTTGAACTGACAAGGAATGCTAGGCAGTGGCATAATTCC
ATGGTTGAGTATTTGTCATGGTTTGTGGATGCATGGATGGTTGCCAAACATGCAAGTAATTTTGGTTGGTATCTTAGTTG
GGCTTCCCAAATTAAAAATATGGTGAAGAATTTGTTGCGACAGGCAAATAGGGCCAGCAATTTTGACACTTCTATACTTG
AGATGAACACACATGTTCAGAAACATTCAGCTTATACTCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2642.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis