Browse Element(s) Details


OsAffx.2643.1.S1_x_at

Description tigr:9630.m01561
TID=OsAffx.2643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alpha-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1673011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16670Os.16612.1.S1_at8/112+9523651..9531796PP-loop family protein, expressed
LOC_Os02g16680Os.49514.1.S1_at11/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16680Os.1502.1.S1_at1/112+9535425..9538478bZIP transcription factor family protein, expressed
LOC_Os02g16690OsAffx.2642.1.S1_s_at11/112+9539378..9542538expressed protein
LOC_Os02g16690Os.24736.1.A1_at11/112+9539378..9542538expressed protein
LOC_Os02g16709Os.24631.1.A1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.12074.1.S1_at11/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.24631.1.A1_s_at9/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709Os.46219.1.S1_at8/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16709OsAffx.28164.2.S1_at1/112+9544169..9550625signal peptidase I family protein, expressed
LOC_Os02g16730OsAffx.2643.1.S1_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16730OsAffx.2643.1.S1_x_at11/112+9551874..9553214Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16740OsAffx.24282.1.S1_at11/112+9555585..9555815hypothetical protein
LOC_Os02g16750OsAffx.12075.1.S1_at10/112+9559186..9559881hypothetical protein
LOC_Os02g16760OsAffx.24283.1.S1_at11/112+9562675..9563847F-box domain containing protein
LOC_Os02g16770OsAffx.12076.1.S1_at11/112+9565901..9568320hypothetical protein
LOC_Os02g16780OsAffx.24284.4.S1_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16780OsAffx.24284.4.S1_x_at11/112+9569675..9570572Alpha-expansin 11 precursor, putative, expressed
LOC_Os02g16790NANA2+9571150..9571803hypothetical protein
LOC_Os02g16800OsAffx.24284.3.S1_at11/112+9574545..9575500Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2643.1.S1_x_at--138--1951Chr02:9552185..9552209 (25 bp)
ACGGCCTCGCCTGCGGGCAGTGCTA
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--429--7171Chr02:9552217..9552241 (25 bp)
GTCTGCGACCGCAAGACGGACCGGA
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--293--1391Chr02:9552230..9552254 (25 bp)
AGACGGACCGGACGTGGTGCAAGCC
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--1141--4091Chr02:9552914..9552938 (25 bp)
CGACTACTTCCAGCTGGTGCTGCTG
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--223--2951Chr02:9552966..9552990 (25 bp)
AAGGCCATGGACGTGAAGGGCTCCA
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--911--2871Chr02:9552981..9553005 (25 bp)
AAGGGCTCCAAGTCGCCGGACTGGA
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--132--4391Chr02:9552988..9553012 (25 bp)
CCAAGTCGCCGGACTGGATGGCCAT
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--1060--5731Chr02:9552999..9553023 (25 bp)
GACTGGATGGCCATGGCGCACAACT
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--495--3911Chr02:9553001..9553025 (25 bp)
CTGGATGGCCATGGCGCACAACTGG
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--504--391Chr02:9553086..9553110 (25 bp)
ATCACCGATGGCCAGACGCTCGTCT
LOC_Os02g16730
OsAffx.2643.1.S1_x_at--1119--9311Chr02:9553124..9553148 (25 bp)
TCGCCCCGGATGGAGGTTCGGCCAA
LOC_Os02g16730
Target Sequence 
ACGGCCTCGCCTGCGGGCAGTGCTACAAGCTCGTCTGCGACCGCAAGACGGACCGGACGTGGTGCAAGCCGGGCGTCTCC
GTCACCATCACCGCCACCAACTTCTGCCCGCCCAACTGGGACCTCCCCAGCGACAGCGGCGGCTGGTGCAACCCGCCGCG
CCCCCACTTCGACATGGCCCAGCCCGCCTGGGAGAAGATCGGCATCTACCGCGGCGGCATCATCCCCGTCATCTACCAAA
GGGTTCCTTGCATGAAGAAGGGCGGGGTGCGGTTCACCATCAACGGGCACGACTACTTCCAGCTGGTGCTGCTGACCAAC
GTCGGGGCGGCCGGCTCGATCAAGGCCATGGACGTGAAGGGCTCCAAGTCGCCGGACTGGATGGCCATGGCGCACAACTG
GGGCGCCCAGTGGCACTCGCTGGCCTACCTCACCGGCCAGGGCCTCTCCTTCCGGGTCACCATCACCGATGGCCAGACGC
TCGTCTTCCCCAACGTCGTTCGCCCCGGATGGAGGTTCGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2643.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis