Browse Element(s) Details


OsAffx.26461.1.S1_at

Description tigr:9632.m04281
TID=OsAffx.26461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4458011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44530Os.31464.1.S1_a_at11/114+26145064..26149295expressed protein
LOC_Os04g44540Os.25216.1.A1_at11/114+26149776..26152713Mitochondrial carrier protein, expressed
LOC_Os04g44550Os.53502.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44550OsAffx.4086.1.S1_at11/114+26152979..26156093coiled-coil-helix-coiled-coil-helix domain containing protein, putative, expressed
LOC_Os04g44560Os.18634.1.S1_at10/114+26156643..26160715expressed protein
LOC_Os04g44570Os.55453.1.S1_at11/114+26161182..26162454MIP family channel proteins containing protein, expressed
LOC_Os04g44580OsAffx.26461.1.S1_at11/114+26162906..26166902expressed protein
LOC_Os04g44590Os.26349.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44590OsAffx.26462.1.S1_at11/114+26168483..26172729expressed protein
LOC_Os04g44600Os.20306.1.S1_at11/114+26173245..26173981expressed protein
LOC_Os04g44610Os.17440.1.S1_at11/114+26176829..26182579ABC-2 type transporter family protein, expressed
LOC_Os04g44620Os.51865.1.S2_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.2.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44620Os.51865.1.S1_at11/114+26178989..26185627Hus1 protein, putative, expressed
LOC_Os04g44630OsAffx.26147.4.S1_s_at11/114+26188695..26193292transposon protein, putative, unclassified
LOC_Os04g44630OsAffx.26147.2.S1_x_at9/114+26188695..26193292transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26461.1.S1_at--140--2211Chr04:26164204..26164228 (25 bp)
ACAACTACGGCTGGTGCAGTGCGGC
LOC_Os04g44580
OsAffx.26461.1.S1_at--1077--6111Chr04:26164111..26164135 (25 bp)
GAGGGCCATGTTTTCAGTACTTTGA
LOC_Os04g44580
OsAffx.26461.1.S1_at--574--2311Chr04:26164069..26164093 (25 bp)
AAAGGATGCCTCTCGCAGACAAGGT
LOC_Os04g44580
OsAffx.26461.1.S1_at--328--8911Chr04:26163823..26163847 (25 bp)
TGAGCTGTGCTATAACTTTCCACCC
LOC_Os04g44580
OsAffx.26461.1.S1_at--833--10451Chr04:26163788..26163812 (25 bp)
TTAGCAGTATTGAGCTCTCTCCATC
LOC_Os04g44580
OsAffx.26461.1.S1_at--1145--9631Chr04:26163535..26163777 (25 bp)
TCAGTTTTCTGGTATCCTATAGGCC
LOC_Os04g44580
OsAffx.26461.1.S1_at--60--10191Chr04:26163518..26163542 (25 bp)
TATAGGCCATGTTCCCGCGATGAAC
LOC_Os04g44580
OsAffx.26461.1.S1_at--244--2931Chr04:26163490..26163514 (25 bp)
AAGGACCTGACTACTTGCTTCTTGA
LOC_Os04g44580
OsAffx.26461.1.S1_at--878--9071Chr04:26163475..26163499 (25 bp)
TGCTTCTTGACTTACCATAGCCTGT
LOC_Os04g44580
OsAffx.26461.1.S1_at--199--511Chr04:26163135..26163159 (25 bp)
ATCGTACGCCGTTTGACAGCAAGGA
LOC_Os04g44580
OsAffx.26461.1.S1_at--367--1451Chr04:26162985..26163009 (25 bp)
AGAAGCTTGACGTCCAGCATCATGA
LOC_Os04g44580
Target Sequence 
ACAACTACGGCTGGTGCAGTGCGGCAGATAACTGGAATGGTCAGTATGCAACAACATCATTAGCGAGGTATGACAGCCCG
AGGTCAATGAATGGAGGGCCATGTTTTCAGTACTTTGAATGTGATTCCCCTTATGAAAGGATGCCTCTCGCAGACAAGGT
GTATGAGCTGTGCTATAACTTTCCACCCCTATCATATCTTAGCAGTATTGAGCTCTCTCCATCTAGTTGGATGTCAGTTT
TCTGGTATCCTATAGGCCATGTTCCCGCGATGAACAAGAAGGACCTGACTACTTGCTTCTTGACTTACCATAGCCTGTCA
ACATTAGAAGATCGTACGCCGTTTGACAGCAAGGACCCGCTGACGCTTCCCCCAATTGGCCTCGCGACGCACAAGACGGA
CGGAGATGTATGGACAAGCGCGAACTCCGGCGACCAAGAGCTGACCACCTCCCTCGTCGGCGCGGCGGACTCGTGGCTGA
AGAAGCTTGACGTCCAGCATCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis