Browse Element(s) Details


OsAffx.26553.2.S1_at

Description tigr:9632.m04889
TID=OsAffx.26553.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5067011/11hypothetical protein
LOC_Os09g281702/11hypothetical protein
LOC_Os01g711501/11hypothetical protein
LOC_Os07g412201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50204Os.6872.2.S1_at11/114+29745888..29749073protein transport protein, putative, expressed
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26553.2.S1_at--220--8710Chr09:16138009..16138028 (20 bp)
ATGGCGTTGAGGGACGTCCGGTATC
NONE
OsAffx.26553.2.S1_at--93--6271Chr04:29770601..29770625 (25 bp)
GATGATTTCGTAACCGGGAATGCTA
LOC_Os04g50670
OsAffx.26553.2.S1_at--498--9291Chr04:29770561..29770585 (25 bp)
TCCGAACGGGACCTTTGCTTATTCA
LOC_Os04g50670
OsAffx.26553.2.S1_at--536--1331Chr04:29770535..29770559 (25 bp)
AGAGGAGTAATACCAGACCATGCAC
LOC_Os04g50670
OsAffx.26553.2.S1_at--427--3811Chr04:29770469..29770493 (25 bp)
CTCCAGCATGCACGCATGGTTGACA
LOC_Os04g50670
OsAffx.26553.2.S1_at--128--991Chr04:29770345..29770369 (25 bp)
AGGAGGAGCCTAGTGCGGACGCAGC
LOC_Os04g50670
OsAffx.26553.2.S1_at--1137--1855Chr02:27838534..27838970 (25 bp)
ACGACGAGCACGTACTTGGCAAGTA
NONE
OsAffx.26553.2.S1_at--133--9891Chr04:29770250..29770274 (25 bp)
TACTTGGCAAGTATGTTGAGGCGGC
LOC_Os04g50670
OsAffx.26553.2.S1_at--646--672Chr09:17089983..17090004 (22 bp)
ATGACGAAGGACACGCCCGTCGGTG
LOC_Os09g28170
OsAffx.26553.2.S1_at--459--2931Chr04:29770130..29770154 (25 bp)
AAGGACACGCCCGTCGGTGAAGAGC
LOC_Os04g50670
OsAffx.26553.2.S1_at--694--4531Chr04:29770122..29770146 (25 bp)
GCCCGTCGGTGAAGAGCTCCGTCGT
LOC_Os04g50670
Target Sequence 
ATGGCGTTGAGGGACGTCCGGTATCTGGTTTTGCGGTTGGGGGATGATTTCGTAACCGGGAATGCTACATACCGGAATCC
CGTCCGAACGGGACCTTTGCTTATTCAAAGAGGAGTAATACCAGACCATGCACGTCCCGAGCAGCAGCAGCAGCCTGTGC
AGGACACGGTGCCGCTCCAGCATGCACGCATGGTTGACATGGGCGGCGGCGTTATGGCGCCCATGCCCGCACCGTCGACA
CACTACCCCGCGCGCGACCGCGAGCTCCTTGCCGGCAGCGCCGGCGCCGGTGCAGGGGAGGAGGAGCCTAGTGCGGACGC
AGCGGTAGATGAGGAAGTAGAGCGCAAAGGTGCTGCCCTCGCCGCATCATCGGCGTGGAGCACGACGAGCACGTACTTGG
CAAGTATGTTGAGGCGGCGGAGGAAGCGGCCACCGGCGACAAGCTCCGACGTGGCGTGGACAGTGGAGGATGCGGTTGTC
AACGACGAGCTCCGGAGTGGGACATGGATGACGAAGGACACGCCCGTCGGTGAAGAGCTCCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26553.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis