Browse Element(s) Details


OsAffx.26554.1.S1_at

Description tigr:9632.m04890
TID=OsAffx.26554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5068011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50208Os.26838.1.S1_at11/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50208OsAffx.26551.1.S1_at2/114+29750254..29753566phosphoenolpyruvate carboxykinase family protein, expressed
LOC_Os04g50212OsAffx.19217.1.S1_x_at2/114+29754217..29754759hypothetical protein
LOC_Os04g50216Os.10083.1.S1_at11/114+29756150..29758746Gtk16 protein, putative, expressed
LOC_Os04g50660Os.27704.1.A1_at11/114+29762517..29769070U3 small nucleolar RNA-associated protein 13, putative, expressed
LOC_Os04g50670OsAffx.26553.2.S1_at11/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_x_at7/114+29770077..29771979hypothetical protein
LOC_Os04g50670OsAffx.26553.1.S1_at6/114+29770077..29771979hypothetical protein
LOC_Os04g50680OsAffx.26554.1.S1_at11/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50680Os.57514.1.S1_x_at1/114+29776877..29778083Myb-like DNA-binding domain containing protein
LOC_Os04g50690OsAffx.14357.1.S1_at10/114+29778938..29779670hypothetical protein
LOC_Os04g50700NANA4+29782407..29783358Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g50710OsAffx.4138.1.S1_at11/114+29785219..29786034Pathogenesis-related protein Bet v I family protein
LOC_Os04g50720Os.50804.1.S1_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_s_at11/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50720OsAffx.4139.1.S1_at9/114+29787791..29792297RWD domain containing protein, expressed
LOC_Os04g50730Os.20398.1.S1_at11/114+29793068..29797326RWD domain containing protein, expressed
LOC_Os04g50740Os.54242.1.S1_at11/114+29797832..29801986Zinc finger found in FPG and IleRS family protein, expressed
LOC_Os04g50750OsAffx.4140.1.S1_at11/114+29802084..29802621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26554.1.S1_at--26--2491Chr04:29777239..29777263 (25 bp)
AACACCATGGTGAACTCGAGCAGCA
LOC_Os04g50680
OsAffx.26554.1.S1_at--509--1491Chr04:29777218..29777242 (25 bp)
AGCAACGTCGCAAGCTTCCAGGAGC
LOC_Os04g50680
OsAffx.26554.1.S1_at--693--5111Chr04:29777179..29777203 (25 bp)
GCACATGCAAACTACCAGCCAGGTT
LOC_Os04g50680
OsAffx.26554.1.S1_at--816--1691Chr04:29777163..29777187 (25 bp)
AGCCAGGTTATCTCCGTGATGTCGT
LOC_Os04g50680
OsAffx.26554.1.S1_at--974--5651Chr04:29777119..29777143 (25 bp)
GACATGGCGCCGCAACTGAACAGTA
LOC_Os04g50680
OsAffx.26554.1.S1_at--981--6991Chr04:29777079..29777103 (25 bp)
GTACGGCTCCAGTGCTCAGATCAAG
LOC_Os04g50680
OsAffx.26554.1.S1_at--282--8991Chr04:29777051..29777075 (25 bp)
TGAACCGGCTGATCAGTGCTGCAAC
LOC_Os04g50680
OsAffx.26554.1.S1_at--636--2571Chr04:29777029..29777053 (25 bp)
AACGATGCTGCATTGGTGCCTGAAA
LOC_Os04g50680
OsAffx.26554.1.S1_at--1080--7771Chr04:29777015..29777039 (25 bp)
GGTGCCTGAAACTTATCCACGGGAA
LOC_Os04g50680
OsAffx.26554.1.S1_at--490--5311Chr04:29776967..29776991 (25 bp)
GAAGGTGCAGGATTTTCCCAGCTTG
LOC_Os04g50680
OsAffx.26554.1.S1_at--360--6111Chr04:29776907..29776931 (25 bp)
GAGTGATCTTGATCCGTTCTGGAAA
LOC_Os04g50680
Target Sequence 
AACACCATGGTGAACTCGAGCAGCAACGTCGCAAGCTTCCAGGAGCAGATGAACGCATTGGCACATGCAAACTACCAGCC
AGGTTATCTCCGTGATGTCGTCCCAAGCTTTCCAGGGCAAGACATGGCGCCGCAACTGAACAGTACTAGCAGTACACCTA
GTACGGCTCCAGTGCTCAGATCAAGCGCTGAACCGGCTGATCAGTGCTGCAACGATGCTGCATTGGTGCCTGAAACTTAT
CCACGGGAAGTGGCAGCATCTGTTGATCACTGGAAGGTGCAGGATTTTCCCAGCTTGGAGCCCCTGGAGCTACCAAATCT
ATCAACTCTGGAGAGTGATCTTGATCCGTTCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis