Browse Element(s) Details


OsAffx.26564.2.S1_at

Description tigr:9632.m05009
TID=OsAffx.26564.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to MYB10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g518009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein
LOC_Os04g51810OsAffx.4151.1.S1_at11/114+30496303..30498019hypothetical protein
LOC_Os04g51820Os.50175.2.S1_at11/114+30505610..30507895Cation transport protein, expressed
LOC_Os04g51830Os.50365.1.S1_at11/114+30515100..30520251Cation transport protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009651biological_processresponse to salt stress
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26564.2.S1_at--942--4111NONE
CGCATCAGCCGGTAACAAACACCTT
NONE
OsAffx.26564.2.S1_at--1006--8651Chr04:30486096..30486546 (25 bp)
TGTGGTGTTCGCAGGATTGGCCTAT
LOC_Os04g51800
OsAffx.26564.2.S1_at--332--4931NONE
GCTTGACTGCTTCAAAAATGCCAAA
NONE
OsAffx.26564.2.S1_at--452--7691Chr04:30489123..30489147 (25 bp)
GGGTAGGAGCTCTAACTATTGCATT
LOC_Os04g51800
OsAffx.26564.2.S1_at--821--1611Chr04:30489411..30489435 (25 bp)
AGCTGTTTTTGCTGCTTGTGCAGGA
LOC_Os04g51800
OsAffx.26564.2.S1_at--449--7331Chr04:30489428..30489452 (25 bp)
GTGCAGGACAAATTCTCCAGGCTTT
LOC_Os04g51800
OsAffx.26564.2.S1_at--907--7051Chr04:30491353..30491377 (25 bp)
GTAAGGTCAATACTTGCTATCATTG
LOC_Os04g51800
OsAffx.26564.2.S1_at--657--8811Chr04:30491376..30491756 (25 bp)
TGTTGTTATTTATCAGCCTATCCAG
LOC_Os04g51800
OsAffx.26564.2.S1_at--984--10111Chr04:30491750..30491774 (25 bp)
TATCCAGTCAAGCAACCGTGCACTT
LOC_Os04g51800
OsAffx.26564.2.S1_at--62--5871Chr04:30491786..30491810 (25 bp)
GAGCCTTCTTCAGAAATCTCCTTCA
LOC_Os04g51800
OsAffx.26564.2.S1_at--530--4311Chr04:30491805..30491829 (25 bp)
CCTTCACCATCTGTAGCGTTTGTTA
LOC_Os04g51800
Target Sequence 
CGCATCAGCCGGTAACAAACACCTTTGGCAATGTGGTGTTCGCAGGATTGGCCTATCTCACTTCCTATCTCAAAGCGAAG
AAGCACAATTCCTGCATATTCTCTAAAAACATCCTGTTAGAAGCTCTTCTTGCTAGTTTATTCTGCTTGACTGCTTCAAA
AATGCCAAAAGGGGTAGGAGCTCTAACTATTGCATTGAAGGAGGGAGCTGTTTTTGCTGCTTGTGCAGGACAAATTCTCC
AGGCTTTCCCTTTTTGGTGGAAATGGAATTCAATGTGTCACAGGAAGGCTGAAATTGTAAGGTCAATACTTGCTATCATT
GTTGTTATTTATCAGCCTATCCAGTCAAGCAACCGTGCACTTGCTGACCTCCCGAGCCTTCTTCAGAAATCTCCTTCACC
ATCTGTAGCGTTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26564.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis