Browse Element(s) Details


OsAffx.26572.1.S1_at

Description tigr:9632.m05080
TID=OsAffx.26572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5243011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52400Os.4851.1.S1_at11/114+30920159..30922461oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g52410Os.57418.1.S1_at11/114+30924033..30925135MADS-box protein ZMM17, putative, expressed
LOC_Os04g52420OsAffx.4155.1.S1_at11/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.28375.1.S1_s_at2/114+30927916..30935621hypothetical protein
LOC_Os04g52420OsAffx.20689.1.A1_x_at1/114+30927916..30935621hypothetical protein
LOC_Os04g52430OsAffx.26572.1.S1_at11/114+30941815..30944324expressed protein
LOC_Os04g52430OsAffx.25952.1.S1_s_at1/114+30941815..30944324expressed protein
LOC_Os04g52440Os.53822.1.S1_x_at11/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52440OsAffx.26573.1.S1_x_at1/114+30949947..30955649aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.14095.1.S1_at11/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450OsAffx.26573.1.S1_x_at10/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52450Os.53822.1.S1_x_at1/114+30957583..30963380aminotransferase, class III family protein, expressed
LOC_Os04g52460Os.9644.1.S1_at11/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.48346.1.S1_at10/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os04g52460Os.38093.1.S1_at3/114+30968296..30976840Viral A-type inclusion protein repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26572.1.S1_at--895--871Chr04:30942705..30942729 (25 bp)
AGGCCGTCACCCTGTGGAAGTTCAT
LOC_Os04g52430
OsAffx.26572.1.S1_at--702--1951Chr04:30942913..30942937 (25 bp)
ACTGGAAGGTGGTCCGCTCCAAGGC
LOC_Os04g52430
OsAffx.26572.1.S1_at--318--1051Chr04:30942981..30943005 (25 bp)
AGGTGCACCATGCTCTTGCCGCTTG
LOC_Os04g52430
OsAffx.26572.1.S1_at--697--11Chr04:30943038..30943487 (25 bp)
ATTGCTTCTTCGAGTTTTCGTCGGA
LOC_Os04g52430
OsAffx.26572.1.S1_at--459--5291Chr04:30943498..30943522 (25 bp)
GAAGGCAGCACGACGGGCATCATCA
LOC_Os04g52430
OsAffx.26572.1.S1_at--1140--3552Chr04:30943515..30943539 (25 bp)
CATCATCATCTCATCTTGCTCAGTT
LOC_Os04g52430
OsAffx.26572.1.S1_at--656--431Chr04:30943527..30943551 (25 bp)
ATCTTGCTCAGTTCTACCTGAACAA
LOC_Os04g52430
OsAffx.26572.1.S1_at--155--5351Chr04:30943623..30943643 (21 bp)
GAAGAGTCTTTGGTTACAACTAATC
LOC_Os04g52430
OsAffx.26572.1.S1_at--772--3651Chr04:30943656..30943680 (25 bp)
CTTCTTTAATTCATGCAGGCTGCCT
LOC_Os04g52430
OsAffx.26572.1.S1_at--322--651Chr04:30943668..30943692 (25 bp)
ATGCAGGCTGCCTTCTCCAAGTCAT
LOC_Os04g52430
OsAffx.26572.1.S1_at--140--6851Chr04:30943987..30944011 (25 bp)
GTTTGTATACTGGTAGGCGTCCGCG
LOC_Os04g52430
Target Sequence 
AGGCCGTCACCCTGTGGAAGTTCATCCACCAGCTCATGGTCCTCGACAGCTTCGCCCACGGCGGCATCCGGGACCACACG
GCGATCCGAGGCTGGTTCACGCGCATCCTCGCCGAGCCCCCGGGCTTCTCCGTGCTCAATCCCCTCGTGCCTCGCCCTCG
CCGCCCACTTCGTCGCCGGCCGCGTCGAGGCGGCCAGGGACATGGCGGACTGGAAGGTGGTCCGCTCCAAGGCGGCCAGC
TTGGCCGGGAAGATGGCGCGCGAGGCGCCGGAGATCAGGTGCACCATGCTCTTGCCGCTTGCCCGGGCCAAGCCCAAGGA
CTTGTTCCCCCTGATTGCTTCTTCGAGTTTTCGTCGGAGGCGTTATGTGAAGGCAGCACGACGGGCATCATCATCTCATC
TTGCTCAGTTCTACCTGAACAAGAAGAAGAGTCTTTGGTTACAACTAATCAATGTAATGTTCCTTCTTTAATTCATGCAG
GCTGCCTTCTCCAAGTCATCCAGAGGTATGTTTGTATACTGGTAGGCGTCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis