Browse Element(s) Details


OsAffx.26575.1.S1_at

Description tigr:9632.m05094
TID=OsAffx.26575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5258011/11TPR Domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed
LOC_Os04g52560OsAffx.14378.1.S1_at11/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52560Os.53329.1.S1_x_at10/114+31031109..31034974transposon protein, putative, unclassified, expressed
LOC_Os04g52570Os.54626.1.S1_at11/114+31035777..31038868expressed protein
LOC_Os04g52580OsAffx.26575.1.S1_at11/114+31041029..31043375TPR Domain containing protein
LOC_Os04g52590OsAffx.14379.1.S1_x_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590Os.18323.1.S1_at11/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52590OsAffx.15019.1.S1_s_at1/114+31044044..31051830Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27773.1.S1_at5/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600OsAffx.4157.1.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52600Os.27084.2.S1_x_at1/114+31055719..31063217Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26575.1.S1_at--310--3711Chr04:31041845..31041869 (25 bp)
CTAGCTCCCATTCCAGAATCTGAAG
LOC_Os04g52580
OsAffx.26575.1.S1_at--557--7171Chr04:31041741..31041765 (25 bp)
GTCTGATAAACCTGCAACTGAAATG
LOC_Os04g52580
OsAffx.26575.1.S1_at--830--2311Chr04:31041594..31041618 (25 bp)
AAAGGTTGAGGTGCCTCCCAGTCTG
LOC_Os04g52580
OsAffx.26575.1.S1_at--362--7631Chr04:31041528..31041552 (25 bp)
GGGACATTCAGGACTTGATTACTCA
LOC_Os04g52580
OsAffx.26575.1.S1_at--851--2771Chr04:31041451..31041475 (25 bp)
AAGAGCTTCCTCAGTATAAATTCAA
LOC_Os04g52580
OsAffx.26575.1.S1_at--25--2331Chr04:31041268..31041452 (25 bp)
AAAGTCAGAACTGTCGCCGGGAGCC
LOC_Os04g52580
OsAffx.26575.1.S1_at--519--1331Chr04:31041235..31041259 (25 bp)
AGAGGAGCATCACCGGTAACACAGA
LOC_Os04g52580
OsAffx.26575.1.S1_at--681--1251Chr04:31041213..31041237 (25 bp)
AGATACACAATTCACTGGTCCCATC
LOC_Os04g52580
OsAffx.26575.1.S1_at--989--8591Chr04:31041198..31041222 (25 bp)
TGGTCCCATCTTGTGAACAGAAGTT
LOC_Os04g52580
OsAffx.26575.1.S1_at--251--10251Chr04:31041077..31041101 (25 bp)
TTTGAAACCTGGCTGGCAAATCCCC
LOC_Os04g52580
OsAffx.26575.1.S1_at--944--8231Chr04:31041063..31041087 (25 bp)
GGCAAATCCCCAAGTCTGAGCTGAG
LOC_Os04g52580
Target Sequence 
CTAGCTCCCATTCCAGAATCTGAAGAGGAATCGTTATATCTTGAAGAAGATAAGCAAGAGTTGCCTCCAGAGAGAAATGT
AAATATCGAGATTTGTATTACCAAGTCTGATAAACCTGCAACTGAAATGATTCTCAAAAAGAAACCTACAACAGAACTTA
TTGTCGAAAATAAACCTGCAACTGAACTGATTCTTGAAAAGAAACCTGCAACTGAACTTATTCTTGAAAAGAAACATGCA
ACTGAACCTCCAAAGGTTGAGGTGCCTCCCAGTCTGCCTCAAAAACCACAAGGGTGGGAGACCATCGCAAAACCAAAGGG
ACATTCAGGACTTGATTACTCAAAATGGGACAAAGTTGAAGATGACTCAAGTGAAGATGAGGATGAAGAGGAAGAAGAGC
TTCCTCAGTATAAATTCAAAGTCAGAACTGTCGCCGGGAGCCCGGAACTCAGAGGAGCATCACCGGTAACACAGATACAC
AATTCACTGGTCCCATCTTGTGAACAGAAGTTCAGGTTTCAGGATTTGAAACCTGGCTGGCAAATCCCCAAGTCTGAGCT
GAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis