Browse Element(s) Details


OsAffx.26611.2.S1_at

Description tigr:9632.m05380
TID=OsAffx.26611.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g553009/11hypothetical protein
LOC_Os05g484441/11hypothetical protein
LOC_Os02g216201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g484891/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55230Os.7692.1.S2_at11/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55230Os.7692.1.S1_at10/114+32616110..32629411Ataxin-2 C-terminal region family protein, expressed
LOC_Os04g55240Os.52439.1.S1_at11/114+32633073..32634031VQ motif family protein, expressed
LOC_Os04g55250Os.51420.1.S1_at11/114+32636588..32637580expressed protein
LOC_Os04g55260Os.20407.1.S1_at10/114+32637521..32641208expressed protein
LOC_Os04g55270OsAffx.4183.1.S1_at10/114+32644603..32645667hypothetical protein
LOC_Os04g55280NANA4+32645881..32648257hypothetical protein
LOC_Os04g55290Os.3537.1.S1_at11/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55290OsAffx.16132.1.S1_at1/114+32649048..32652552G10 protein homolog, putative, expressed
LOC_Os04g55300OsAffx.26611.2.S1_at9/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.26611.1.S1_x_at8/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32209.1.A1_at5/114+32652874..32655325hypothetical protein
LOC_Os04g55300OsAffx.32283.1.S1_at1/114+32652874..32655325hypothetical protein
LOC_Os04g55310Os.47999.2.A1_x_at1/114+32675235..32676347retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26611.2.S1_at--412--9791Chr04:32652933..32652957 (25 bp)
TAACGTGGCTCCCAATGACCGGAAG
LOC_Os04g55300
OsAffx.26611.2.S1_at--389--4471Chr04:32653095..32653119 (25 bp)
GCCTCGTCATGATGGCCAGCTCCTA
LOC_Os04g55300
OsAffx.26611.2.S1_at--986--2418Chr07:3568987..3569006 (20 bp)
AAAAGCCGATGTGTTCAGGTATACT
NONE
OsAffx.26611.2.S1_at--247--7431NONE
GTGTTCAGGTATACTATCTTGCAAG
NONE
OsAffx.26611.2.S1_at--1053--5153Chr12:13355579..13355600 (22 bp)
GCAAGAAAGGAGCTCGCAACAAAAC
NONE
OsAffx.26611.2.S1_at--168--6013Chr12:13355601..13355625 (25 bp)
GAGAGCTTTTTGATAGCCCGTTCAC
NONE
OsAffx.26611.2.S1_at--1073--10392Chr04:32654713..32654737 (25 bp)
TTTTGATAGCCCGTTCACTCGACTA
LOC_Os04g55300
OsAffx.26611.2.S1_at--151--5711NONE
GACTACCACGCTTATCGCTCGATAG
NONE
OsAffx.26611.2.S1_at--154--10153Chr06:9350931..9350953 (23 bp)
TATCGCTCGATAGGACTTCCCGTAA
NONE
OsAffx.26611.2.S1_at--519--2932Chr04:32655257..32655281 (25 bp)
AAGGAACTGAACTGGCTTGCCCGGA
LOC_Os04g55300
OsAffx.26611.2.S1_at--550--4912Chr04:32655271..32655295 (25 bp)
GCTTGCCCGGAAAGAATGGATTGCT
LOC_Os04g55300
Target Sequence 
TAACGTGGCTCCCAATGACCGGAAGCGCTCACGTCATGGACTTGCGCACGTGCGGGGTGTGGCGCGGGTCCCAACTACAA
CTGCAATGTTGTCTTCACCGGCACGCGTGAAGGCTGGGGCTTCCGCCTCATCACGCTGGCCAAGCTCCTATCCCGGGCTT
CCGCCTCGTCATGATGGCCAGCTCCTATCCCCCAAGCTCATAGTCGCCCCCATCGAGCGGCTCAAAAGCCGATGTGTTCA
GGTATACTATCTTGCAAGAAAGGAGCTCGCAACAAAACGAGAGCTTTTTGATAGCCCGTTCACTCGACTACCACGCTTAT
CGCTCGATAGGACTTCCCGTAACCCGAAAAGAAAGGAACTGAACTGGCTTGCCCGGAAAGAATGGATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26611.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis