Browse Element(s) Details


OsAffx.26615.1.S1_at

Description tigr:9632.m05407
TID=OsAffx.26615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g55520Os.22629.1.S1_at11/114+32811544..32812764AP2 domain containing protein, expressed
LOC_Os04g55530OsAffx.22492.1.S1_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55530OsAffx.22492.1.S1_x_at1/114+32815039..32821156retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.5.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.2.S1_x_at4/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55540Os.31312.1.S1_at1/114+32821477..32825082retrotransposon protein, putative, unclassified
LOC_Os04g55550OsAffx.26615.1.S1_at11/114+32833967..32834859hypothetical protein
LOC_Os04g55560Os.9874.1.S1_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.9874.1.S1_s_at11/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560Os.46461.1.A1_x_at10/114+32852569..32856304AP2 domain containing protein, expressed
LOC_Os04g55560OsAffx.27068.1.S1_x_at1/114+32852569..32856304AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26615.1.S1_at--583--5051Chr04:32834644..32834668 (25 bp)
GCAGCAATCTGCCAATGTGTAGGAG
LOC_Os04g55550
OsAffx.26615.1.S1_at--89--2571Chr04:32834672..32834696 (25 bp)
AACTGAGTGATGTCCATATCCTGGC
LOC_Os04g55550
OsAffx.26615.1.S1_at--915--6111Chr04:32834676..32834700 (25 bp)
GAGTGATGTCCATATCCTGGCATCC
LOC_Os04g55550
OsAffx.26615.1.S1_at--177--4991Chr04:32834695..32834719 (25 bp)
GCATCCCCGATGTTCTTTGTTTCTA
LOC_Os04g55550
OsAffx.26615.1.S1_at--656--8751Chr04:32834705..32834729 (25 bp)
TGTTCTTTGTTTCTACGTACTTCGA
LOC_Os04g55550
OsAffx.26615.1.S1_at--162--6831Chr04:32834713..32834737 (25 bp)
GTTTCTACGTACTTCGACAAAGCAT
LOC_Os04g55550
OsAffx.26615.1.S1_at--356--5611Chr04:32834728..32834752 (25 bp)
GACAAAGCATGCATCATCAAGAAGC
LOC_Os04g55550
OsAffx.26615.1.S1_at--16--9731Chr04:32834744..32834768 (25 bp)
TCAAGAAGCACGGACGGGCTCGTAT
LOC_Os04g55550
OsAffx.26615.1.S1_at--639--8571Chr04:32834781..32834805 (25 bp)
TGGTTGTGCCACTTTATGCGTCGTA
LOC_Os04g55550
OsAffx.26615.1.S1_at--206--3331Chr04:32834790..32834814 (25 bp)
CACTTTATGCGTCGTAGCCTATGAA
LOC_Os04g55550
OsAffx.26615.1.S1_at--1144--1671Chr04:32834805..32834829 (25 bp)
AGCCTATGAAGAGCGATGGCCCTTT
LOC_Os04g55550
Target Sequence 
GCAGCAATCTGCCAATGTGTAGGAGATGAACTGAGTGATGTCCATATCCTGGCATCCCCGATGTTCTTTGTTTCTACGTA
CTTCGACAAAGCATGCATCATCAAGAAGCACGGACGGGCTCGTATGCCTGTGGGCCGTGGTTGTGCCACTTTATGCGTCG
TAGCCTATGAAGAGCGATGGCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis