Browse Element(s) Details


OsAffx.26627.1.S1_x_at

Description tigr:9632.m05461
TID=OsAffx.26627.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5608011/11D-mannose binding lectin family protein, expressed
LOC_Os04g560902/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56030Os.55343.1.S1_at11/114+33155284..33156145expressed protein
LOC_Os04g56040OsAffx.26624.1.S1_at11/114+33158271..33159338Glycine rich protein family protein, expressed
LOC_Os04g56050OsAffx.4189.1.S1_at11/114+33159721..33161165hypothetical protein
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26627.1.S1_x_at--557--5692Chr04:33190265..33190289 (25 bp)
GACTTCGAGCCCAAGGTGACGGACT
LOC_Os04g56090
OsAffx.26627.1.S1_x_at--328--7092Chr04:33190298..33190322 (25 bp)
GTCAAGCTGCTGAGCCGCGACGCCG
LOC_Os04g56090
OsAffx.26627.1.S1_x_at--1139--3531Chr04:33180589..33180613 (25 bp)
CATCTCTACGCCACTCATGAGCTAG
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--932--9951Chr04:33180583..33180607 (25 bp)
TACGCCACTCATGAGCTAGCAGCAA
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--212--4411Chr04:33180580..33180604 (25 bp)
GCCACTCATGAGCTAGCAGCAAATG
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--787--5131Chr04:33180562..33180586 (25 bp)
GCAAATGCAGCAGTCGTGAGTCTCG
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--263--2291Chr04:33180560..33180584 (25 bp)
AAATGCAGCAGTCGTGAGTCTCGTT
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--619--651Chr04:33180558..33180582 (25 bp)
ATGCAGCAGTCGTGAGTCTCGTTGG
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--434--1531Chr04:33180554..33180578 (25 bp)
AGCAGTCGTGAGTCTCGTTGGCGAC
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--342--3451Chr04:33180552..33180576 (25 bp)
CAGTCGTGAGTCTCGTTGGCGACGT
LOC_Os04g56080
OsAffx.26627.1.S1_x_at--444--1891Chr04:33180531..33180555 (25 bp)
ACGTTGGGGGCATCAATTGCGTCTG
LOC_Os04g56080
Target Sequence 
GACTTCGAGCCCAAGGTGACGGACTTCGGCCTCGTCAAGCTGCTGAGCCGCGACGCCGGCAGCCACATGGCGCTGTCGCG
GGTGCAGGGGACCAGNGGCTACATTNCGCCNGAGTGCTGGACNGTNGGNCGCNCGATCANCGGCAANGCCGACGTGTACA
GCTTCGGCGTCGTGCTCCTCGAGCTGNTCAGGGGGCAGAGGGTGTGCGACTGGGTNGCGGCNNNGGCGNNNNNNGACGGG
GCNTGGNATNTCCAGCGNCTGGCCGNGTGGCTCAAGGAGAAGCTGAAGNGCGACGACGNCGAGNNGNNGGNNNNNNCGTG
GCTGGAGGAGCTCGTGGANGCNCGGCTGCGCGGTGANTTCAACCATGTGCAGGCNGCCGNGNTGCTGGAGCTGGCNGTTT
NNTGCGTGGACGGTGANCCNANCAGGNGGCCGAGCATGANCNCNGTTGNNCANAAGCTCNTCTCGNTGNANNNNANNNNN
NANCATCTCTACGCCACTCATGAGCTAGCAGCAAATGCAGCAGTCGTGAGTCTCGTTGGCGACGTTGGGGGCATCAATTG
CGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26627.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis