Browse Element(s) Details


OsAffx.26633.1.S1_at

Description tigr:9632.m05492
TID=OsAffx.26633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5636011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56309NANA4+33350494..33354481hypothetical protein
LOC_Os04g56320Os.52480.1.S1_at11/114+33356080..33360581ATPase, AAA family protein, expressed
LOC_Os04g56330OsAffx.26631.1.S1_at11/114+33361246..33363275ABC transporter family protein
LOC_Os04g56340NANA4+33366752..33367006hypothetical protein
LOC_Os04g56350Os.14253.1.S2_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56350Os.14253.1.S1_s_at11/114+33370801..33372769Nucleolar protein, Nop52 containing protein, expressed
LOC_Os04g56360OsAffx.26633.1.S1_at11/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56360OsAffx.28666.1.S1_x_at1/114+33375236..33377019Protein kinase domain containing protein
LOC_Os04g56370Os.57187.1.S1_at1/114+33385707..33385976hypothetical protein
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26633.1.S1_at--455--4051Chr04:33376141..33376165 (25 bp)
CGAGGAGTCCAACCTGAGGATTGTT
LOC_Os04g56360
OsAffx.26633.1.S1_at--43--6171Chr04:33376156..33376180 (25 bp)
GAGGATTGTTCATCGCGACATCAAG
LOC_Os04g56360
OsAffx.26633.1.S1_at--710--8111Chr04:33376198..33376222 (25 bp)
GGACGATAAGTTTCAGCCCAAGATC
LOC_Os04g56360
OsAffx.26633.1.S1_at--1079--4911Chr04:33376233..33376257 (25 bp)
GCTTGGCAAGATTCTTCCCCGAGGA
LOC_Os04g56360
OsAffx.26633.1.S1_at--942--3411Chr04:33376259..33376283 (25 bp)
CAGACATACCTCAGCACGGCATTTG
LOC_Os04g56360
OsAffx.26633.1.S1_at--743--8271Chr04:33376276..33376425 (25 bp)
GGCATTTGCCGGCACACTAGGCTAC
LOC_Os04g56360
OsAffx.26633.1.S1_at--630--5911Chr04:33376453..33376477 (25 bp)
GAGCTCACAGTGAAAGCCGACACCT
LOC_Os04g56360
OsAffx.26633.1.S1_at--233--4811Chr04:33376497..33376674 (25 bp)
GCTCGAGATCGCATGGAGGCTGTAC
LOC_Os04g56360
OsAffx.26633.1.S1_at--388--1271Chr04:33376685..33376709 (25 bp)
AGATACTGGAGCTGGTCGACGCGAA
LOC_Os04g56360
OsAffx.26633.1.S1_at--749--1051Chr04:33376748..33376772 (25 bp)
AGGTGTGCCAGATCGCGCTGCTCTG
LOC_Os04g56360
OsAffx.26633.1.S1_at--267--6151Chr04:33376810..33376834 (25 bp)
GAGGTGGTGCTAATGCTCACCATGA
LOC_Os04g56360
Target Sequence 
CGAGGAGTCCAACCTGAGGATTGTTCATCGCGACATCAAGGCGAGCAACATCCTCCTGGACGATAAGTTTCAGCCCAAGA
TCAGTGACTTTGGCTTGGCAAGATTCTTCCCCGAGGACCAGACATACCTCAGCACGGCATTTGCCGGCACACTAGGCTAC
ACGGCGCCTGAATACGCCATCAGAGGGGAGCTCACAGTGAAAGCCGACACCTACAGCTTCGGAGTTCTCGTGCTCGAGAT
CGCATGGAGGCTGTACGAGCAATCCAAGATACTGGAGCTGGTCGACGCGAAGCTGCAGGCCGACGGGTTCGACGAGAAGG
AGGTGATGCAGGTGTGCCAGATCGCGCTGCTCTGCGTGCAGCCATTCCCGAACCTGAGGCCGGCGATGTCGGAGGTGGTG
CTAATGCTCACCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis